CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.786e-49
Identity = 100/208 (48.08%), Postives = 138/208 (66.35%), Query Frame = 3
Query:   96 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            +V VTGAAGQI Y+L+  IA G + GT+ PV L +L+IP A     GV MEL+D+AFPL++ +  T DA EA  G N A +VG  PR +G ER D+++ N  I+  Q  A+  +AA + +VLVV NPANTNALI    AP +PA     + RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD+ +ATV    GEK V +LV
Sbjct:   11 KVTVTGAAGQISYSLLWRIANGEVFGTETPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLV 214          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.639e-49
Identity = 102/214 (47.66%), Postives = 137/214 (64.02%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            MAK+PVRV VTGAAGQIGYAL+  +A G MLG DQP+IL ML++P      AL GV MEL D AFPL+  ++ T D   A    + A++VG  PR  GMERKD++ +N  I+  Q  A+   A+ + +V+VV NPANTNA I  + AP +P  N T + RLDHNRA  Q++ +    V+ V+ +I+WGNHS + YPD+   TV+     K V +
Sbjct:    1 MAKKPVRVTVTGAAGQIGYALLFRVASGQMLGPDQPIILQMLELPIDKVQAALKGVMMELEDCAFPLLADMIGTGDPKVAFKDSDYALLVGARPRGPGMERKDLLLENAKIFIEQGKAMNAVASRDIRVIVVGNPANTNAWIAMKSAPDLPKGNFTAMLRLDHNRAKSQLATRTGKPVASVEKMIVWGNHSPTMYPDIRFCTVDGQPAVKLVND 214          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 104/202 (51.49%), Postives = 135/202 (66.83%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    + A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL   V++++ +I+WGNHS + YPD   AT +
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLGKPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_XYLF2 (Malate dehydrogenase OS=Xylella fastidiosa (strain M23) GN=mdh PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 104/202 (51.49%), Postives = 135/202 (66.83%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    + A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL   V++++ +I+WGNHS + YPD   AT +
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLGKPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LARHH (Malate dehydrogenase OS=Laribacter hongkongensis (strain HLHK9) GN=mdh PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 103/202 (50.99%), Postives = 135/202 (66.83%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            PVRV VTGAAGQIGY+L+  IA G MLG +QPVIL +LD+P A  A+ GV MEL D AFPL+ G+VAT D   A    +I ++VG  PR +GMER D++  N +I+  Q  A+ ++A  + KVLVV NPANTNA I ++ A  +    PA N T + RLDHNRAL Q++ K    V+ ++N+ +WGNHS + Y D   ATVN
Sbjct:    4 PVRVAVTGAAGQIGYSLLFRIASGEMLGQNQPVILQLLDLPQAQNAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADICLLVGARPRSKGMERADLLEANGAIFTVQGKAIAENAKEDVKVLVVGNPANTNAYIARKAAEKVGRTNPA-NYTAMLRLDHNRALSQLAAKTGKAVASIENMAVWGNHSPTMYADYRFATVN 204          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_KOCRD (Malate dehydrogenase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=mdh PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 105/214 (49.07%), Postives = 139/214 (64.95%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            M+  PV V VTGAAGQIGY+L+  IA G MLG  +PV L +L+IP A  AL G  MEL D AFPL+  V   +D  E   G  +A++VG  PR +GMER D++  N +I+  Q  AL   A  + +V+V  NPANTNALI +  AP IPA   + LTRLDHNRA+  ++ +    V DVK++ +WGNHS++QYPD++HA V   AG +P  +LV
Sbjct:    1 MSLTPVTVAVTGAAGQIGYSLLFRIAHGDMLGRQRPVRLRLLEIPSALPALEGTVMELQDCAFPLLADVEIGSDPREVFDGAQLALLVGARPRTKGMERGDLLEANGAIFTEQGRALNDVADHDVRVVVTGNPANTNALIAQRNAPDIPASRFSALTRLDHNRAVAMLAAQTGASVDDVKHLSVWGNHSATQYPDLDHARV---AG-RPALDLV 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RUBXD (Malate dehydrogenase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=mdh PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.383e-48
Identity = 94/194 (48.45%), Postives = 130/194 (67.01%), Query Frame = 3
Query:   99 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            V VTGAAG IGYA++  IA G MLG DQ + L +L+I PA +A  G  MEL D AFPL++ V  T D  EA  G N+ +++G  PR+ GMER D++  N  I+K Q  A+  HAA + +VLVV NPANTN LI    AP +P +  + +TRLD NRA+  +++KL V V DV+++++WGNHS + +PD+ +A V
Sbjct:    5 VTVTGAAGAIGYAILFRIASGQMLGPDQKLRLKLLEIEPALKAAEGTAMELYDCAFPLLEAVDITADPKEAFDGANVCLLIGARPRQRGMERADLLEANGQIFKPQGRAINDHAADDVRVLVVGNPANTNCLIAMNNAPDVPRERFSAMTRLDENRAVSMLAQKLGVGVEDVRDLVVWGNHSPTMFPDLFNARV 198          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.080e-48
Identity = 103/202 (50.99%), Postives = 135/202 (66.83%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K  VRV VTGAAGQIGY+L+  IA G M G D+ VIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    + A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL+  V++++ +I+WGNHS + YPD   AT +
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRSVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.023e-48
Identity = 106/208 (50.96%), Postives = 136/208 (65.38%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 701
            M + PV++ VTGAAGQI Y+L+  IA G +LG D P+ L +L+I PA +AL GV MEL D AF  +  +    D  +   GVN A +VG  PRK GMER D+++KN +I+ AQ  AL   AA + +VLV  NPANTNALI    A  IP  +   LTRLDHNRA  Q++ K    V+DV+++ IWGNHSS+QYPDV HA V   AG+K
Sbjct:    1 MTQTPVKIAVTGAAGQICYSLLFRIASGSLLG-DTPIELRLLEITPALKALEGVVMELDDCAFGNLVNIEIGDDPKKVFDGVNAAFLVGAMPRKAGMERSDLLTKNGAIFTAQGKALNDVAADDVRVLVTGNPANTNALIAATNAVDIPNNHFAALTRLDHNRAKTQLARKTGKTVNDVRHMTIWGNHSSTQYPDVFHAEV---AGQK 204          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CORDI (Malate dehydrogenase OS=Corynebacterium diphtheriae GN=mdh PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.997e-47
Identity = 95/205 (46.34%), Postives = 131/205 (63.90%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            M +   ++ VTGAAGQI Y+L+  IA G + G + PV L +L+IP A     GV MEL+D+AFPL+K +V T  A  A  G N A +VG  PR +G ER D+++ N  I+  Q  AL  +AA + +VLVV NPANTNALI +  A  IPA     + RLDHNR + Q+SEKL    +D++  ++WGNHS+ Q+PD+ +AT+   A
Sbjct:    1 MTESVKKIAVTGAAGQIAYSLLWRIANGDVYGKNTPVELQLLEIPQAIGGAEGVAMELLDSAFPLLKNIVVTDKAEVAFDGTNAAFLVGAKPRGKGEERADLLTANGKIFGPQGKALNDNAADDIRVLVVGNPANTNALIAQHAAKDIPADRFNAMMRLDHNRGIAQLSEKLGRDKNDIEKFVVWGNHSAGQFPDITYATIGGEA 205          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_CORGB2.786e-4948.08Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_SYNFM3.639e-4947.66Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]
MDH_XYLFT4.752e-4951.49Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLF24.752e-4951.49Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_LARHH4.752e-4950.99Malate dehydrogenase OS=Laribacter hongkongensis (... [more]
MDH_KOCRD4.752e-4949.07Malate dehydrogenase OS=Kocuria rhizophila (strain... [more]
MDH_RUBXD1.383e-4848.45Malate dehydrogenase OS=Rubrobacter xylanophilus (... [more]
MDH_XYLFM3.080e-4850.99Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_PROAC4.023e-4850.96Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_CORDI1.997e-4746.34Malate dehydrogenase OS=Corynebacterium diphtheria... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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