CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 98/205 (47.80%), Postives = 132/205 (64.39%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI---PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            M+K P+RV +TGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPL+ G+VAT D   A    ++ ++VG  PR +GMER D+++ N +I+  Q  A+ ++A  + KVLVV NP NTNA I    A  +      N   + RLDHNRAL Q++ K    VS +K +++WGNHS + Y D    T N
Sbjct:    1 MSKAPMRVAITGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQQAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADVCLLVGARPRTKGMERADLLTANGAIFTVQGKAIAENAKEDVKVLVVGNPCNTNAFIAAAAAKKVGRTNPNNYHGMLRLDHNRALSQLAGKTGRAVSSLKKLVVWGNHSPTMYADYRFCTSN 205          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 99/205 (48.29%), Postives = 131/205 (63.90%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS---IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            M + PVRV VTGAAG++ YAL+  IA G MLG DQPV L + D+P A +A+ GV MEL D AFPL+  ++AT D V A +   IA++V   PR  G ER +V++ N  I+ AQ + + +HA P+CKVLVV NP NTNA +  + A     IPA+N   L RLDHNRAL Q++ K    V  VK + +WGNHS + Y D    T++
Sbjct:    1 MNQAPVRVTVTGAAGRVAYALLFRIASGDMLGADQPVQLVLFDLPHAMKAMQGVVMELEDCAFPLLTEIIATDDPVLAFSDTQIALLVSARPRAVGAERLEVLADNAKIFAAQGAVIGRHANPDCKVLVVGNPCNTNACVAMKAAQKFSRIPARNFAALLRLDHNRALAQLALKTGRPVGGVKRLAVWGNHSPTVYADDRFTTID 205          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_COREF (Malate dehydrogenase OS=Corynebacterium efficiens GN=mdh PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 99/210 (47.14%), Postives = 134/210 (63.81%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            P ++ VTGAAGQI Y+L+  IA G + G D PV L++L+IP A     GV MEL D+AFPL+  +  T D  EA  G N A +VG  PR +G ER  ++S N  I+  Q  A+  HAA + +VLVV NPANTNALI    AP +P      + RLDHNRA+ Q++ K     S+ ++V++WGNHS++Q+PD+ +ATV    GEK V +LV
Sbjct:    4 PKKITVTGAAGQIAYSLLWRIANGEVYGADTPVELNLLEIPDALGGAEGVAMELSDSAFPLLHNINITADLNEAFDGANAAFLVGAKPRGKGEERAALLSNNGKIFGPQGKAINDHAAQDIRVLVVGNPANTNALIAMSNAPDVPQSRFNAMMRLDHNRAISQLATKTGRLSSEFQDVVVWGNHSAAQFPDITYATV---GGEK-VSDLV 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_METCA (Malate dehydrogenase OS=Methylococcus capsulatus GN=mdh PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.809e-47
Identity = 98/212 (46.23%), Postives = 129/212 (60.85%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K PV V VTGAAGQI Y+L+  IA G + G  QPVIL +LD+P A   L GV MEL D A PL++ +  ++D  E   G     M+G  PR  GMER+D++  N  I+ AQ  AL + A+   K+LVV NPANTNALI +  AP +     + +TRLDHNRA   ++      V+++  V+IWGNHS +QYPD++HA V      KP   LV
Sbjct:    2 KTPVHVAVTGAAGQIAYSLLFRIAVGDLFGPHQPVILKLLDVPSAERVLEGVAMELDDCASPLLQEIEVSSDPAEVFDGAEAVFMLGATPRGPGMERRDLLQVNADIFSAQGRALNESASRRVKILVVGNPANTNALIAQRNAPDLAPGCFSAMTRLDHNRATSLLARHCGCNVAEISRVVIWGNHSPTQYPDLHHARVK----GKPALSLV 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_AZOSE (Malate dehydrogenase OS=Azoarcus sp. (strain EbN1) GN=mdh PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.809e-47
Identity = 101/205 (49.27%), Postives = 130/205 (63.41%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI---PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            M+K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPL+ G+VAT D   A    +  ++VG  PR  GMER D+++ N +I+  Q  A+ ++A  N KVLVV NP NTNA I    A  +      N   + RLDHNRAL Q++ K    VS +K +++WGNHS + Y D    T N
Sbjct:    1 MSKAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQKAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADYCLLVGARPRGPGMERADLLTANGAIFTVQGKAIAENANENVKVLVVGNPCNTNAYIAGAAARKVGRTNPNNYHGMLRLDHNRALSQLAAKTGRPVSSLKKMVVWGNHSPTMYADYRFCTSN 205          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEGPL (Malate dehydrogenase OS=Legionella pneumophila (strain Lens) GN=mdh PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.207e-46
Identity = 95/212 (44.81%), Postives = 132/212 (62.26%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            M    VRV VTGAAGQIGYALV  IA G M G +  V L++L++ PA  +L GV MEL D AFPL+K +V T D  +A  GVN A++VG  PRK+GMER D++  N  I+  Q  A+  +A+ + +V VV NP NTN LI    A  +P+     +T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +  + + +
Sbjct:    1 MTNNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTSAARVIND 212          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEGPH (Malate dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=mdh PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.883e-46
Identity = 95/212 (44.81%), Postives = 132/212 (62.26%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            M    VRV VTGAAGQIGYALV  IA G M G +  V L++L++ PA  +L GV MEL D AFPL+K +V T D  +A  GVN A++VG  PRK+GMER D++  N  I+  Q  A+  +A+ + +V VV NP NTN LI    A  +P+     +T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +  + + +
Sbjct:    1 MTNNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTSAAQVIND 212          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEGPA (Malate dehydrogenase OS=Legionella pneumophila (strain Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.883e-46
Identity = 95/212 (44.81%), Postives = 132/212 (62.26%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            M    VRV VTGAAGQIGYALV  IA G M G +  V L++L++ PA  +L GV MEL D AFPL+K +V T D  +A  GVN A++VG  PRK+GMER D++  N  I+  Q  A+  +A+ + +V VV NP NTN LI    A  +P+     +T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +  + + +
Sbjct:    1 MTNNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTSAAQVIND 212          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEGPC (Malate dehydrogenase OS=Legionella pneumophila (strain Corby) GN=mdh PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.765e-46
Identity = 95/212 (44.81%), Postives = 132/212 (62.26%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            M    VRV VTGAAGQIGYALV  IA G M G +  V L++L++ PA  +L GV MEL D AFPL+K +V T D  +A  GVN A++VG  PRK+GMER D++  N  I+  Q  A+  +A+ + +V VV NP NTN LI    A  +P+     +T LD  RA  Q+++K  V ++ V  + IWGNHS++QYPD  +A +N  +  + + +
Sbjct:    1 MINNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTSAAQVIND 212          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEPBP (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 98/197 (49.75%), Postives = 128/197 (64.97%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            V+V VTGAAGQIGYAL+  IA G M G D  V L +L++  A  A  GV MEL D AFPL++ V  +++  EA   +N A++VG  PRK GMER D++  N  I+  Q  A+E++AA + +VLVV NP NTNALI    A  +P+     +T LD NRA  Q+++K  V V DV NV IWGNHS++QYPD  +A VN
Sbjct:    5 VKVAVTGAAGQIGYALLFRIASGQMFGPDTAVELQLLELEQAIPAAKGVIMELDDCAFPLLEKVSVSSNIDEAFRDINWALLVGSVPRKAGMERGDLLKINGGIFTTQGKAIEKNAASDVRVLVVGNPCNTNALIAMNNAKGVPSDRWFAMTGLDENRAKTQLAQKAGVLVKDVSNVAIWGNHSATQYPDFFNAKVN 201          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_DECAR3.406e-4747.80Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]
MDH2_RHOFD3.406e-4748.29Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]
MDH_COREF4.448e-4747.14Malate dehydrogenase OS=Corynebacterium efficiens ... [more]
MDH_METCA5.809e-4746.23Malate dehydrogenase OS=Methylococcus capsulatus G... [more]
MDH_AZOSE5.809e-4749.27Malate dehydrogenase OS=Azoarcus sp. (strain EbN1)... [more]
MDH_LEGPL2.207e-4644.81Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPH2.883e-4644.81Malate dehydrogenase OS=Legionella pneumophila sub... [more]
MDH_LEGPA2.883e-4644.81Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPC3.765e-4644.81Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEPBP3.188e-4549.75Malate dehydrogenase OS=Leptospira biflexa serovar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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