CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEPBA (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mdh PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 98/197 (49.75%), Postives = 128/197 (64.97%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            V+V VTGAAGQIGYAL+  IA G M G D  V L +L++  A  A  GV MEL D AFPL++ V  +++  EA   +N A++VG  PRK GMER D++  N  I+  Q  A+E++AA + +VLVV NP NTNALI    A  +P+     +T LD NRA  Q+++K  V V DV NV IWGNHS++QYPD  +A VN
Sbjct:    5 VKVAVTGAAGQIGYALLFRIASGQMFGPDTAVELQLLELEQAIPAAKGVIMELDDCAFPLLEKVSVSSNIDEAFRDINWALLVGSVPRKAGMERGDLLKINGGIFTTQGKAIEKNAASDVRVLVVGNPCNTNALIAMNNAKGVPSDRWFAMTGLDENRAKTQLAQKAGVLVKDVSNVAIWGNHSATQYPDFFNAKVN 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CORJK (Malate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.211e-44
Identity = 95/208 (45.67%), Postives = 133/208 (63.94%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 716
            V V VTGA GQIGY+L+  IA+G + G D+ V L +L+     +A  GV +EL D AFPL+  V  TT+  E     N   +VG  PR++G ER D+++ N  I+  Q  A+ ++AA + +V+VV NPANTNA I+   A  +  + +T LTRLDHNR L Q+++KL V V D+KN+ +WGNHS+SQ+PDV   T+N   GEK   +L
Sbjct:    9 VTVTVTGAGGQIGYSLLFRIAKGEVFG-DRVVNLRLLETEQGVQAARGVALELADCAFPLLGEVSITTELSEGFKDANAVFLVGAKPRQKGEERADLLAANGKIFGPQGKAIAEYAADDVRVIVVGNPANTNAAIVAAHAEGLDPRRVTALTRLDHNRGLAQVADKLGVAVRDLKNMTVWGNHSASQFPDVAELTLN---GEKVADKL 212          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEPBL (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 97/209 (46.41%), Postives = 133/209 (63.64%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V+V VTGAAGQIGY+L+  IA G M GTD  V + ML++  A  A  GV MEL D AFPL++ V  ++D   A   +N A++VG  PRK GMER D++  N  I+  Q  A+E++AA + +VLVV NP NTN LI    A  IP+     +T+LD NRA  Q++ K  V V +V ++ IWGNHSS+QYPD  +A ++     KPV +++
Sbjct:    5 VKVAVTGAAGQIGYSLLFRIASGQMFGTDTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDIAFKDINWALLVGSVPRKAGMERGDLLKINGGIFINQGKAIEKNAASDVRVLVVGNPCNTNCLIAMNNAKGIPSDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSSTQYPDFYNAKIS----GKPVTDVI 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEPBJ (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mdh PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 97/209 (46.41%), Postives = 133/209 (63.64%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V+V VTGAAGQIGY+L+  IA G M GTD  V + ML++  A  A  GV MEL D AFPL++ V  ++D   A   +N A++VG  PRK GMER D++  N  I+  Q  A+E++AA + +VLVV NP NTN LI    A  IP+     +T+LD NRA  Q++ K  V V +V ++ IWGNHSS+QYPD  +A ++     KPV +++
Sbjct:    5 VKVAVTGAAGQIGYSLLFRIASGQMFGTDTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDIAFKDINWALLVGSVPRKAGMERGDLLKINGGIFINQGKAIEKNAASDVRVLVVGNPCNTNCLIAMNNAKGIPSDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSSTQYPDFYNAKIS----GKPVTDVI 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEPIN (Malate dehydrogenase OS=Leptospira interrogans GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.308e-42
Identity = 94/209 (44.98%), Postives = 128/209 (61.24%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V+V VTGAAGQIGY+L+  IA G M G D  V + ML++  A  A  GV MEL D AFPL++ V  ++D   A   +N A++VG  PRK GMER D++  N  I+  Q  A+E++AA + ++LVV NP NTN LI    A  I       +T+LD NRA  Q++ K  V V +V ++ IWGNHS++QYPD      NT    KPV +++
Sbjct:    5 VKVAVTGAAGQIGYSLLFRIASGQMFGADTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDTAFKEINWALLVGSVPRKAGMERGDLLKINGGIFVNQGKAIEKNAASDVRILVVGNPCNTNCLIAMNNAKGISQDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSATQYPDF----YNTKISGKPVTDVI 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_LEPIC (Malate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.308e-42
Identity = 94/209 (44.98%), Postives = 128/209 (61.24%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V+V VTGAAGQIGY+L+  IA G M G D  V + ML++  A  A  GV MEL D AFPL++ V  ++D   A   +N A++VG  PRK GMER D++  N  I+  Q  A+E++AA + ++LVV NP NTN LI    A  I       +T+LD NRA  Q++ K  V V +V ++ IWGNHS++QYPD      NT    KPV +++
Sbjct:    5 VKVAVTGAAGQIGYSLLFRIASGQMFGADTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDTAFKEINWALLVGSVPRKAGMERGDLLKINGGIFVNQGKAIEKNAASDVRILVVGNPCNTNCLIAMNNAKGISQDRWFAMTKLDENRAKSQLASKAGVPVKEVTHLGIWGNHSATQYPDF----YNTKISGKPVTDVI 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.138e-41
Identity = 94/212 (44.34%), Postives = 125/212 (58.96%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K+ + + ++GAAG I   L+  +A GV+ G DQP+ L +L    +  AL GV MEL D+ +PL++ V    D  E       A+++G  PR  GMER D++  N  IY  Q  AL   A+PN KV+VV NP NTNALI  +  P+IPAKN   LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD     VN   G  PV+E++
Sbjct:   89 KKMITIAISGAAGTISNHLLFKLASGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWALLIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPPNIPAKNFHSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDF----VNAQIGGVPVKEVI 296          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.792e-41
Identity = 85/211 (40.28%), Postives = 127/211 (60.19%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            +P+++ ++G AGQI Y+L+  +A G + G +Q + L +L++P A  AL GVKME+ D AFPL+  +   +D  +A   ++ A+++G   R  GMER+D++ +N  I+  Q  AL   A  + K+ VV NP NTN LI    APS+  +N   +TRLD NRA   +S+K  V   DV  V IWGNHS++Q PD     VN    +KPV  ++
Sbjct:    3 QPIKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPLLSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQENSKIFVNQGQALNAVAKSSAKIFVVGNPCNTNCLIALNNAPSLKRENFYAMTRLDQNRATFFLSQKSQVSTKDVSCVTIWGNHSATQVPDF----VNAKISQKPVETII 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLTR (Malate dehydrogenase OS=Chlamydia trachomatis GN=mdh PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 86/214 (40.19%), Postives = 121/214 (56.54%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            M  + V V VTG  GQI Y+ +  +A G + G D  + L + DIP    AL+GV+MEL D AFPL++ V  TT   +A  G++ A ++G  PR  GMER+D++ KN  I+  Q  AL   A  + K+ VV NP NTN  I    AP +  KN   + RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E +
Sbjct:    1 MVSQTVSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGMERRDLLKKNGEIFATQGKALNTTAKRDAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETI 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLTB (Malate dehydrogenase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=mdh PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.087e-40
Identity = 86/214 (40.19%), Postives = 120/214 (56.07%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            M  + V V VTG  GQI Y+ +  +A G + G D  + L + DIP    AL+GV+MEL D AFPL++ V  TT   +A  G++ A ++G  PR  GMER+D++ KN  I   Q  AL   A  + K+ VV NP NTN  I    AP +  KN   + RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E +
Sbjct:    1 MVSQTVSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGMERRDLLKKNGEIVATQGKALNTTAKRDAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETI 210          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_LEPBA3.188e-4549.75Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_CORJK1.211e-4445.67Malate dehydrogenase OS=Corynebacterium jeikeium (... [more]
MDH_LEPBL7.851e-4446.41Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPBJ7.851e-4446.41Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPIN4.308e-4244.98Malate dehydrogenase OS=Leptospira interrogans GN=... [more]
MDH_LEPIC4.308e-4244.98Malate dehydrogenase OS=Leptospira interrogans ser... [more]
MDHP_SPIOL2.138e-4144.34Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDH_PARUW2.792e-4140.28Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH_CHLTR1.061e-4040.19Malate dehydrogenase OS=Chlamydia trachomatis GN=m... [more]
MDH_CHLTB3.087e-4040.19Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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