CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLTA (Malate dehydrogenase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mdh PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.087e-40
Identity = 85/214 (39.72%), Postives = 121/214 (56.54%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            M  + V V VTG  GQI Y+ +  +A G + G D  + L + DIP    AL+GV+MEL D AFPL++ V  TT   +A  G++ A ++G  PR  G+ER+D++ KN  I+  Q  AL   A  + K+ VV NP NTN  I    AP +  KN   + RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E +
Sbjct:    1 MVSQTVSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGVERRDLLKKNGEIFATQGKALNTTAKRDAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETI 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLT2 (Malate dehydrogenase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=mdh PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.087e-40
Identity = 86/214 (40.19%), Postives = 120/214 (56.07%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            M  + V V VTG  GQI Y+ +  +A G + G D  + L + DIP    AL+GV+MEL D AFPL++ V  TT   +A  G++ A ++G  PR  GMER+D++ KN  I   Q  AL   A  + K+ VV NP NTN  I    AP +  KN   + RLD NR    +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E +
Sbjct:    1 MVSQTVSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGMERRDLLKKNGEIVATQGKALNTTAKRDAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETI 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            +P+RV VTGAAGQI Y+L+  +A G + G D+ V L +L+IP A   L GV MEL D AFP +  V A  +  +A  G+N  +MVG  PR  GMER D++  N  I+  Q  AL + AA + + +VV NP NTN +I    +  +P +  + + RLD NRA   ++ K   QV DV NV+IWGNHS++Q PD   A +    G KPV E++
Sbjct:    3 DPIRVAVTGAAGQIAYSLLVRLASGQLFGKDRKVELKLLEIPQAMGPLEGVMMELQDCAFPTLAKVEAFDNPEQAFDGINWCLMVGSRPRGPGMERSDLIKINGPIFVNQGKALNR-AAQDVRAVVVGNPCNTNCMIAAHNS-DVPHERFSAMMRLDQNRAKYLLASKAGAQVIDVTNVVIWGNHSNNQVPDFEFAKI----GGKPVPEVI 207          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 93/212 (43.87%), Postives = 127/212 (59.91%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K+ V + V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ +PL++ V    D  E    V+ A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N KVLVV NP NTNALI  + AP IPAKN   LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E++
Sbjct:   84 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID----GRPVKEVI 291          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.414e-39
Identity = 90/212 (42.45%), Postives = 127/212 (59.91%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K+ + + V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ FPL++ VV + D  E       A+++G  PR  G+ER  ++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + AP+IPAKN   LTRLD NRA  Q++ K  V    V N+ IWGNHS++Q PD  +A ++      PV+E++
Sbjct:   96 KKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAALLDINGQIFAEQGKALNAVASRNAKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGL----PVKEVI 303          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 84/212 (39.62%), Postives = 121/212 (57.08%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            KE VRV VTG  GQI Y  +  +A G + G D+ V L + D+P    AL+GV+MEL D A+PL+  +  TT   +A  G++ A ++G  PR  GMER D++ +N  I+  Q +AL   A  + K+ VV NP NTN  I  + AP +  KN   + RLD NR    ++ +  V + +V  V+IWGNHS+ Q PD   A ++     KP  E++
Sbjct:    4 KEVVRVAVTGGKGQIAYNFLFALAHGDVFGVDRGVDLRIYDVPGTERALSGVRMELDDGAYPLLHRLRVTTSLNDAFDGIDAAFLIGAVPRGPGMERGDLLKQNGQIFSLQGAALNTAAKRDAKIFVVGNPVNTNCWIAMKHAPRLHRKNFHAMLRLDQNRMHSMLAHRAEVPLEEVSRVVIWGNHSAKQVPDFTQARIS----GKPAAEVI 211          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 90/210 (42.86%), Postives = 123/210 (58.57%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            K+ + V V+GAAG I   L+  +A G + G DQP+ L +L    +  AL GV MEL D+ +PL++ V    D  E       A+++G  PR  GMER D++  N  I+  Q  AL   A+PN KV+VV NP NTNALI  + AP+IP KN   LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++     + +R+
Sbjct:  108 KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGIPVTEVIRD 317          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 90/212 (42.45%), Postives = 127/212 (59.91%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K+ + + V+GAAG I   L+  +A G + G +QP+ L +L    + +AL GV MEL D+ FPL++ VV + D  E       A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + AP+IPAKN   LTRLD NRA  Q++ K  V    V N+ IWGNHS++Q PD  +A ++      PV+E++
Sbjct:   92 KKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGL----PVKEVI 299          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 92/212 (43.40%), Postives = 127/212 (59.91%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K+ V + V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV+MEL D+ +PL++ V       E    V+ A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N KVLVV NP NTNALI  +  P+IPAKN   LTRLD NRA  QI+ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E++
Sbjct:   87 KKLVTIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLREVSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNVKVLVVGNPCNTNALICLKNTPNIPAKNFHALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID----GRPVKEII 294          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLCV (Malate dehydrogenase OS=Chlamydophila caviae GN=mdh PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.213e-38
Identity = 80/209 (38.28%), Postives = 120/209 (57.42%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V V VTG  GQI Y+ +  +A G + G+D  + L + D+P    AL+GV+MEL D A+PL++ +  TT   +AC G++ A ++G  PR  GMER D++ +N  I+  Q S L   A  + K+ VV NP NTN  I    AP +  +N   + RLD NR    ++ +  V + +V NV++WGNHS+ Q PD   A ++     KP  E++
Sbjct:    9 VSVAVTGGTGQIAYSFLFALAHGDVFGSDCSIDLRVYDLPGLERALSGVRMELDDCAYPLLQSLRVTTSLEDACDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNVCAKRDAKIFVVGNPVNTNCWIAMNKAPKLNRRNFHSMLRLDQNRMHTMLAHRAEVPLDEVTNVVVWGNHSAKQVPDFTQALIS----GKPAVEVI 213          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_CHLTA3.087e-4039.72Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDH_CHLT23.087e-4040.19Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDH_MAGSM1.532e-3943.60Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]
MDHP1_SORBI1.532e-3943.87Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
MDHP_PEA3.414e-3942.45Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDH_CHLPN4.458e-3939.62Malate dehydrogenase OS=Chlamydia pneumoniae GN=md... [more]
MDHP_FLABI5.823e-3942.86Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP_MEDSA7.605e-3942.45Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP2_SORBI7.605e-3943.40Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDH_CHLCV2.213e-3838.28Malate dehydrogenase OS=Chlamydophila caviae GN=md... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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