CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.408e-38
Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V V V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ +PL++ V    D       V+ A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N +VLVV NP NTNALI  + AP+IPAKN   LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E++
Sbjct:   90 VNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID----GRPVKEVI 294          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.098e-37
Identity = 86/200 (43.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+ + + V+GAAG I   L+  +A G + G DQP+ L +L    +  AL GV MEL D+ +PL++ V    D  +       A+++G  PR  GMER D++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + AP+IPAKN   LTRLD NRA  Q++ K  V    V N+ IWGNHS++Q PD  +A ++
Sbjct:   95 KKMITIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKID 294          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.446e-37
Identity = 79/202 (39.11%), Postives = 111/202 (54.95%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            M  + V V VTG  GQI Y  +  +A G + G D  + L + DIP    +L+GV+MEL D AFPL++ V  TT   +A   ++ A ++G  PR  GMER+D++ KN  I+  Q   L   A    K+ VV NP NTN  I    AP +  KN   + RLD NR    ++ +  V +S V  V++WGNHS+ Q PD   A ++
Sbjct:    1 MFSQTVSVAVTGGTGQIAYCFLFALAHGDIFGPDTGIDLRIYDIPGTERSLSGVRMELDDGAFPLLQRVQVTTSLHDAFDDIDAAFLIGSVPRGPGMERRDLLKKNGEIFATQGKVLNTAAKREAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLAHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIH 202          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLFF (Malate dehydrogenase OS=Chlamydophila felis (strain Fe/C-56) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 77/209 (36.84%), Postives = 118/209 (56.46%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V V VTG  GQI Y+ +  +A G + G+D  + L + D+P     L+G++MEL D A+PL++ +  TT   +A  G++ A ++G  PR  GMER D++ +N  I+  Q S L   A  + K+ VV NP NTN  I    AP +  +N   + RLD NR    ++ +  V + +V NV+IWGNHS+ Q PD   + ++     KP  E++
Sbjct:    7 VSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRVYDLPGLERVLSGIRMELDDCAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNTSAKRDAKIFVVGNPVNTNCWIAMSRAPKLNRRNFHSMLRLDQNRMQAMLAHRAQVPLDEVTNVVIWGNHSAKQVPDFTQSLIS----GKPAVEVI 211          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 78/209 (37.32%), Postives = 118/209 (56.46%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            V V VTG  GQI Y+ +  +A G + G+D  + L + D+P     L+GV+MEL D A+PL++ +  TT   +A  G++ A ++G  PR  GMER D++ +N  I+  Q S L   A  + K+ VV NP NTN  I    AP +  +N   + RLD NR    ++ +  V + +V +V+IWGNHS+ Q PD   A ++     KP  E++
Sbjct:    9 VSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRIYDLPGLERVLSGVRMELDDGAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNTSAKRDAKIFVVGNPVNTNCWIAMSQAPRLNRRNFHSMLRLDQNRMHTMLAHRAEVPLDEVSHVVIWGNHSAKQVPDFTQALIS----GKPAVEVI 213          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_STEMA (Malate dehydrogenase (Fragment) OS=Stenotrophomonas maltophilia GN=mdh PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 64/109 (58.72%), Postives = 76/109 (69.72%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSI 404
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKI 110          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 64/200 (32.00%), Postives = 107/200 (53.50%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            +P+ V V  AA    Y ++P +  G +L  ++ + LH+ D     E L G++ME+ D +FP +K +  TTD   A    +IA+++  F +    +    M   VS YK  A A+ Q A+ + +VLV    P N+   IL +  PSIP +NI  + ++   +A   ++++L V  + V +VI+WGN   + Y DV+ A V+
Sbjct:  130 KPLHVCVINAARSPAYHVLPSLVNGKIL-REEEIALHLHDSEENLEKLKGLEMEVFDLSFPFLKEISVTTDLPTAFQNAHIAIVLDDFDQGGKEDAIGDMETKVSFYKRVAEAINQTASKDIRVLVAGTGPLNSLVSILIDHTPSIPRQNIAAVAQVKERQAKSLLAKRLTVNSAGVCDVIVWGNVGGTTYTDVSRARVH 328          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH1B_BOVIN (Putative malate dehydrogenase 1B OS=Bos taurus GN=MDH1B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 54/198 (27.27%), Postives = 95/198 (47.98%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP-ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P++V +T A+    Y L+P++  G + G    + +++ D     E L   K E  D A P ++ V   T A EA  G ++ +++     KE    +D +     + +   S +E++A    K++V      N    +L ++AP+  A NI  +      +A   ++ KL +  S +K+VIIWGN S + Y D+  A V
Sbjct:  131 PLQVWITSASSLACYHLIPILTSGEVFGPQMEISINLFDNKHTEEKLISHKQEAEDLASPCLQSVSICTQAEEAFHGAHVIIILDDHVDKEINSLEDCIRSRAPLCQLYGSLIEKNAHNFAKIIVGGKTFVNLKTALLMKYAPTF-AHNIIAVALGVEGQAKAALARKLKITPSCIKDVIIWGNISGNNYVDLRKAKV 327          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH1B_HUMAN (Putative malate dehydrogenase 1B OS=Homo sapiens GN=MDH1B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 53/198 (26.77%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP-ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P++V +T A+    Y L+P++  G + G    + + + D   A E L  + +E  D A P+++ V   T   EA    ++ V++     KE    +D +   V + +     +E++A  + +V+V      N   ++L  +AP I A NI  +       A   ++ KL    S +K+VIIWGN S + Y D+    V
Sbjct:  131 PLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYGYLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRI-AHNIIAVALGVEGEAKAILARKLKTAPSYIKDVIIWGNISGNNYVDLRKTRV 327          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH2_AQUAE (Malate dehydrogenase 2 OS=Aquifex aeolicus GN=mdh2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 57/217 (26.27%), Postives = 104/217 (47.93%), Query Frame = 3
Query:   69 SELMAKEPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 716
            S LM K  + V+  G  G+ + Y L  +    V L       L     P  A+AL+  +M ++      +KG+    +  E   G +I V+  G PR+EGM R+D++ +N+ I K    A++++A  +  ++VV+NP +T      +     P + I     LD  R    + EK+ +  +D++ +++ G H     P  +H+ +    G+KP+ E+
Sbjct:    8 SFLMKKPKISVIGAGKVGENVAYLLTILGLGDVYLFARYKKGLE----PAKAKALDLKQMAVLMDIDINVKGISYDKEGFEELKGSDIVVITAGIPRREGMSREDLLYENLKILKKFTDAIKEYAKDSI-IIVVSNPVDTLTYATIKLTGFEPRRVIGMAGVLDSARFKNFVKEKIGISNADIRTLVL-GTHGDLMVPVTSHSFI----GDKPIEEV 214          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDHP_MAIZE8.408e-3843.54Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDHP_MESCR1.098e-3743.00Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDH_CHLMU2.446e-3739.11Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLFF7.118e-3736.84Malate dehydrogenase OS=Chlamydophila felis (strai... [more]
MDH_CHLAB2.071e-3637.32Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_STEMA2.805e-2558.72Malate dehydrogenase (Fragment) OS=Stenotrophomona... [more]
MDH1B_BRAFL2.626e-2332.00Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]
MDH1B_BOVIN9.046e-1627.27Putative malate dehydrogenase 1B OS=Bos taurus GN=... [more]
MDH1B_HUMAN7.658e-1526.77Putative malate dehydrogenase 1B OS=Homo sapiens G... [more]
MDH2_AQUAE3.217e-1326.27Malate dehydrogenase 2 OS=Aquifex aeolicus GN=mdh2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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