CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH1B_MOUSE (Putative malate dehydrogenase 1B OS=Mus musculus GN=Mdh1b PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 48/198 (24.24%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P++V +  A   +   L+P++  G + G    + L + D     + L  + ME  D A P+++ V   T   EA     + +++     +E    +  +   V + +     +E++A  + KV+V   N  N    +L ++AP+I A NI  +      +A   ++ K+    +++K+VIIWGN + + Y D+  A V
Sbjct:  131 PLQVWIASAGTYVCCHLIPLLLSGEVFGMHTEISLTLFDQEQREDCLRSIVMETQDLASPVLRTVSFCTTVKEAFLQAQVIIILDDSTEEEVYSLESCLRSRVPLCRLYGYLIEKNAHKSVKVIVGGKNFVNLKTTLLMQYAPNI-ASNIIAVALGVEGQAKAVLARKMKTTSANIKDVIIWGNITGNNYVDLRKAKV 327          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOCS (Malate dehydrogenase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 56/204 (27.45%), Postives = 98/204 (48.04%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLI---KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA++ + ++    AGQIG  L       ++ G  +   + +LDIP A     G  +++ +A+ P+     G   T++  +   G ++ ++  G PRK GM R D++  N  I KA    +  HA P+  V+V+ NP +    ++++     PAK +     LD  R    ++E+  V V DV    + G H  +  P V ++TV
Sbjct:    1 MARKKIALV---GAGQIGGTLA------LLAGQKELGDIVLLDIPDAEGVAKGKALDIAEAS-PVEGFDAGYTGTSNYADLA-GADVVIVTAGVPRKPGMSRDDLVGINARIIKAVGEGIRTHA-PDAFVIVITNPLDAMVGLMQQVTGFDPAKVVGMAGVLDSARFRWFLAEEFKVSVEDV-TAFVLGGHGDTMVPSVRYSTV 191          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CAUSK (Malate dehydrogenase OS=Caulobacter sp. (strain K31) GN=mdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 58/201 (28.86%), Postives = 90/201 (44.78%), Query Frame = 3
Query:  117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            AG IG  L  + AR  +      ++  + +  P  +AL+  +   V      +KGV    D      G ++ ++  G PRK GM R D++  N+ + KA    ++ HA PN  V+ + NP +     L++F+     K I     LD  R    ++EK  V V D+ +    G H     P V H+TV    G  P+ ELV
Sbjct:   11 AGMIGGTLAHIAAREEL---GDILLFDIAEGTPQGKALDIAEASAVFGKDVSLKGVNDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAFFLAEKTGVSVEDI-HAWTLGGHGDDMVPMVRHSTV----GGLPLPELV 198          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 57/211 (27.01%), Postives = 99/211 (46.92%), Query Frame = 3
Query:   96 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-IKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS---IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 716
            +V V GAAG IG  L  +I    ++ T     LH+ DI      + GV  +L     P  ++     ++  +    VN+ V+  G PRK GM R D+ + N +I K    A+ ++  PN  + +++NP N+   I  E          K +  +T LD  RA   +S+K N+++ DV   +I G+   +  P ++    +    ++ ++EL
Sbjct:   84 KVAVLGAAGGIGQPLSLLIKMSPLVST-----LHLYDIAN----VKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAEN-CPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQEL 284          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_HYPNA (Malate dehydrogenase OS=Hyphomonas neptunium (strain ATCC 15444) GN=mdh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 57/214 (26.64%), Postives = 98/214 (45.79%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            MA+  + ++    +G IG  L  + AR  +      ++  + +  P  + L+  +   V  A   +KGV    +      G ++ ++  G PRK GM R D++  N+ + KA    ++ HA PN  V+ + NP +     L++F+     K +     LD +R    +SEK  V V+D+ +    G H     P V H+TV    G  P+ +LV
Sbjct:    1 MARNKIALI---GSGMIGGTLAHVAAREEL---GDVILFDIAEGLPQGKGLDIAESTPVYGASVNLKGV----NDYAGIAGADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQKFSGLPTEKVVGMAGVLDSSRFAYFLSEKTGVSVADI-HAWTLGGHGDDMVPMVRHSTV----GGLPLTQLV 198          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 58/192 (30.21%), Postives = 91/192 (47.40%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 659
            ++V V GAAG IG AL  ++   +  G+D    L + D+ P      GV ++L      +        D  +A TG ++ ++  G PRK GM+R D+ + N  I K     +  +  PN  V ++ NP NT   I  E   A  +  KN +  +T LD  RA   ++E  +V VS V   +I G+  ++  P
Sbjct:    1 MKVAVLGAAGGIGQALSLLLKTQLPAGSD----LALYDVAPVVP---GVAVDLSHIPTAVKVTGHGKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVKNLIEGVADN-CPNACVGIITNPVNTTVAIAAETLKAKGVYDKNKLFGVTTLDVIRAETFVAELKDVDVSSVHVPVIGGHSGTTILP 184          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYXXA (Malate dehydrogenase OS=Myxococcus xanthus GN=mdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 65/206 (31.55%), Postives = 102/206 (49.51%), Query Frame = 3
Query:  120 GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL-----VDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            GQIG  L  ++A    LG    V+L+  DIP A   + G  +++     VD     +KG   TTD  +   G ++ ++  G PRK GM R+D++  N+ I    A  ++QH APN  V+ VANP +     L + A  +P   +  +   LD +R    ++E L   + DV+ +++ G H     P V H+TV    G  P+ EL+
Sbjct:   15 GQIGGNLA-LLAVQKSLGD---VVLY--DIPAAEGLVKGKALDINQLAAVDGYDCRVKG---TTDWKDVA-GSDVIIITAGMPRKPGMSREDLLEINLKIMTDVAGNIKQH-APNAFVINVANPLDAMVFALHKIA-GLPKHMVAGMAGVLDTSRFKCFVAEALGCSIRDVEALVL-GGHGDDMVPLVRHSTV----GGVPLTELI 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOS5 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 50/188 (26.60%), Postives = 88/188 (46.81%), Query Frame = 3
Query:  117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            AGQIG  L  + A   +      V+  + +  P  +AL+  +    +    ++KG     ++ E   G ++ ++  G PRK GM R D++  N+ + K+    ++ HA PN  V+ + NP +     L++F+   P K +     LD  R    +S + NV + DV    + G H  +  P V ++TV
Sbjct:   11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEDIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPPEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 57/193 (29.53%), Postives = 93/193 (48.19%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAV-EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 659
            ++V V GAAG IG AL  ++  G+  G++    L + D+ P    +  V +  +  A   +K      DA+ EA    +I ++  G PRK GM+R D+ + N  I K  A  +   + P   V ++ NP N    I+ E    A +  AK +  +T LD  R+   ++E   V V+ VK  +I G+  ++  P
Sbjct:    1 MKVAVLGAAGGIGQALSLLLKTGLPAGSE----LSLYDVAPVVPGV-AVDLSHIPTA---VKVAGFGADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKTLAEGIVA-SCPKALVGIITNPVNGTVPIVAEVFKKAGTYDAKRVFGITTLDVIRSEAFVAELKGVDVATVKVPVIGGHSGTTILP 184          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CAUCR (Malate dehydrogenase OS=Caulobacter crescentus GN=mdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 56/201 (27.86%), Postives = 88/201 (43.78%), Query Frame = 3
Query:  117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            AG IG  L  + AR  +      ++  + +  P  +AL+  +   V      +KG     D      G ++ ++  G PRK GM R D++  N+ + KA    ++ HA PN  V+ + NP +     L++F+     K I     LD  R    ++E   V V D+ +    G H     P V H+TV    G  P+ ELV
Sbjct:   11 AGMIGGTLAHIAAREEL---GDVILFDIAEGTPQGKALDIAEASAVFGKDVALKGANDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAYFLAEATGVSVEDI-HAWTLGGHGDDMVPMVRHSTV----GGLPLPELV 198          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH1B_MOUSE4.202e-1324.24Putative malate dehydrogenase 1B OS=Mus musculus G... [more]
MDH_RHOCS7.167e-1327.45Malate dehydrogenase OS=Rhodospirillum centenum (s... [more]
MDH_CAUSK6.068e-1228.86Malate dehydrogenase OS=Caulobacter sp. (strain K3... [more]
MDHP_ARATH7.924e-1227.01Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDH_HYPNA1.035e-1126.64Malate dehydrogenase OS=Hyphomonas neptunium (stra... [more]
MDH_ALTMD1.352e-1130.21Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_MYXXA1.765e-1131.55Malate dehydrogenase OS=Myxococcus xanthus GN=mdh ... [more]
MDH_RHOS53.011e-1126.60Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_PSEHT3.011e-1129.53Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_CAUCR3.011e-1127.86Malate dehydrogenase OS=Caulobacter crescentus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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