CF835909
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH1B_MOUSE (Putative malate dehydrogenase 1B OS=Mus musculus GN=Mdh1b PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13 Identity = 48/198 (24.24%), Postives = 93/198 (46.97%), Query Frame = 3 Query: 90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680 P++V + A + L+P++ G + G + L + D + L + ME D A P+++ V T EA + +++ +E + + V + + +E++A + KV+V N N +L ++AP+I A NI + +A ++ K+ +++K+VIIWGN + + Y D+ A V Sbjct: 131 PLQVWIASAGTYVCCHLIPLLLSGEVFGMHTEISLTLFDQEQREDCLRSIVMETQDLASPVLRTVSFCTTVKEAFLQAQVIIILDDSTEEEVYSLESCLRSRVPLCRLYGYLIEKNAHKSVKVIVGGKNFVNLKTTLLMQYAPNI-ASNIIAVALGVEGQAKAVLARKMKTTSANIKDVIIWGNITGNNYVDLRKAKV 327
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOCS (Malate dehydrogenase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=mdh PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13 Identity = 56/204 (27.45%), Postives = 98/204 (48.04%), Query Frame = 3 Query: 78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLI---KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680 MA++ + ++ AGQIG L ++ G + + +LDIP A G +++ +A+ P+ G T++ + G ++ ++ G PRK GM R D++ N I KA + HA P+ V+V+ NP + ++++ PAK + LD R ++E+ V V DV + G H + P V ++TV Sbjct: 1 MARKKIALV---GAGQIGGTLA------LLAGQKELGDIVLLDIPDAEGVAKGKALDIAEAS-PVEGFDAGYTGTSNYADLA-GADVVIVTAGVPRKPGMSRDDLVGINARIIKAVGEGIRTHA-PDAFVIVITNPLDAMVGLMQQVTGFDPAKVVGMAGVLDSARFRWFLAEEFKVSVEDV-TAFVLGGHGDTMVPSVRYSTV 191
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CAUSK (Malate dehydrogenase OS=Caulobacter sp. (strain K31) GN=mdh PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12 Identity = 58/201 (28.86%), Postives = 90/201 (44.78%), Query Frame = 3 Query: 117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719 AG IG L + AR + ++ + + P +AL+ + V +KGV D G ++ ++ G PRK GM R D++ N+ + KA ++ HA PN V+ + NP + L++F+ K I LD R ++EK V V D+ + G H P V H+TV G P+ ELV Sbjct: 11 AGMIGGTLAHIAAREEL---GDILLFDIAEGTPQGKALDIAEASAVFGKDVSLKGVNDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAFFLAEKTGVSVEDI-HAWTLGGHGDDMVPMVRHSTV----GGLPLPELV 198
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12 Identity = 57/211 (27.01%), Postives = 99/211 (46.92%), Query Frame = 3 Query: 96 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-IKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS---IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 716 +V V GAAG IG L +I ++ T LH+ DI + GV +L P ++ ++ + VN+ V+ G PRK GM R D+ + N +I K A+ ++ PN + +++NP N+ I E K + +T LD RA +S+K N+++ DV +I G+ + P ++ + ++ ++EL Sbjct: 84 KVAVLGAAGGIGQPLSLLIKMSPLVST-----LHLYDIAN----VKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAEN-CPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQEL 284
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_HYPNA (Malate dehydrogenase OS=Hyphomonas neptunium (strain ATCC 15444) GN=mdh PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11 Identity = 57/214 (26.64%), Postives = 98/214 (45.79%), Query Frame = 3 Query: 78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719 MA+ + ++ +G IG L + AR + ++ + + P + L+ + V A +KGV + G ++ ++ G PRK GM R D++ N+ + KA ++ HA PN V+ + NP + L++F+ K + LD +R +SEK V V+D+ + G H P V H+TV G P+ +LV Sbjct: 1 MARNKIALI---GSGMIGGTLAHVAAREEL---GDVILFDIAEGLPQGKGLDIAESTPVYGASVNLKGV----NDYAGIAGADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQKFSGLPTEKVVGMAGVLDSSRFAYFLSEKTGVSVADI-HAWTLGGHGDDMVPMVRHSTV----GGLPLTQLV 198
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11 Identity = 58/192 (30.21%), Postives = 91/192 (47.40%), Query Frame = 3 Query: 93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 659 ++V V GAAG IG AL ++ + G+D L + D+ P GV ++L + D +A TG ++ ++ G PRK GM+R D+ + N I K + + PN V ++ NP NT I E A + KN + +T LD RA ++E +V VS V +I G+ ++ P Sbjct: 1 MKVAVLGAAGGIGQALSLLLKTQLPAGSD----LALYDVAPVVP---GVAVDLSHIPTAVKVTGHGKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVKNLIEGVADN-CPNACVGIITNPVNTTVAIAAETLKAKGVYDKNKLFGVTTLDVIRAETFVAELKDVDVSSVHVPVIGGHSGTTILP 184
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYXXA (Malate dehydrogenase OS=Myxococcus xanthus GN=mdh PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11 Identity = 65/206 (31.55%), Postives = 102/206 (49.51%), Query Frame = 3 Query: 120 GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL-----VDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719 GQIG L ++A LG V+L+ DIP A + G +++ VD +KG TTD + G ++ ++ G PRK GM R+D++ N+ I A ++QH APN V+ VANP + L + A +P + + LD +R ++E L + DV+ +++ G H P V H+TV G P+ EL+ Sbjct: 15 GQIGGNLA-LLAVQKSLGD---VVLY--DIPAAEGLVKGKALDINQLAAVDGYDCRVKG---TTDWKDVA-GSDVIIITAGMPRKPGMSREDLLEINLKIMTDVAGNIKQH-APNAFVINVANPLDAMVFALHKIA-GLPKHMVAGMAGVLDTSRFKCFVAEALGCSIRDVEALVL-GGHGDDMVPLVRHSTV----GGVPLTELI 203
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOS5 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=mdh PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11 Identity = 50/188 (26.60%), Postives = 88/188 (46.81%), Query Frame = 3 Query: 117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680 AGQIG L + A + V+ + + P +AL+ + + ++KG ++ E G ++ ++ G PRK GM R D++ N+ + K+ ++ HA PN V+ + NP + L++F+ P K + LD R +S + NV + DV + G H + P V ++TV Sbjct: 11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEDIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPPEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11 Identity = 57/193 (29.53%), Postives = 93/193 (48.19%), Query Frame = 3 Query: 93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAV-EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 659 ++V V GAAG IG AL ++ G+ G++ L + D+ P + V + + A +K DA+ EA +I ++ G PRK GM+R D+ + N I K A + + P V ++ NP N I+ E A + AK + +T LD R+ ++E V V+ VK +I G+ ++ P Sbjct: 1 MKVAVLGAAGGIGQALSLLLKTGLPAGSE----LSLYDVAPVVPGV-AVDLSHIPTA---VKVAGFGADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKTLAEGIVA-SCPKALVGIITNPVNGTVPIVAEVFKKAGTYDAKRVFGITTLDVIRSEAFVAELKGVDVATVKVPVIGGHSGTTILP 184
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CAUCR (Malate dehydrogenase OS=Caulobacter crescentus GN=mdh PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11 Identity = 56/201 (27.86%), Postives = 88/201 (43.78%), Query Frame = 3 Query: 117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719 AG IG L + AR + ++ + + P +AL+ + V +KG D G ++ ++ G PRK GM R D++ N+ + KA ++ HA PN V+ + NP + L++F+ K I LD R ++E V V D+ + G H P V H+TV G P+ ELV Sbjct: 11 AGMIGGTLAHIAAREEL---GDVILFDIAEGTPQGKALDIAEASAVFGKDVALKGANDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAYFLAEATGVSVEDI-HAWTLGGHGDDMVPMVRHSTV----GGLPLPELV 198 The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 212
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bpback to top |