CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CAUCN (Malate dehydrogenase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 56/201 (27.86%), Postives = 88/201 (43.78%), Query Frame = 3
Query:  117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            AG IG  L  + AR  +      ++  + +  P  +AL+  +   V      +KG     D      G ++ ++  G PRK GM R D++  N+ + KA    ++ HA PN  V+ + NP +     L++F+     K I     LD  R    ++E   V V D+ +    G H     P V H+TV    G  P+ ELV
Sbjct:   11 AGMIGGTLAHIAAREEL---GDVILFDIAEGTPQGKALDIAEASAVFGKDVALKGANDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAYFLAEATGVSVEDI-HAWTLGGHGDDMVPMVRHSTV----GGLPLPELV 198          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOPS (Malate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB5) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 53/202 (26.24%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA++ + ++    +GQIG  L  MI    +      V+  + +  P  +AL+  +   VD       G     ++ EA  G ++ ++  G PRK GM R D++S N+ + +   + ++++A P+  V+ + NP +     L++ A  +PAK +  +   LD  R    ++++ NV V DV    + G H  +  P V ++TV
Sbjct:    1 MARDKIALI---GSGQIGGTLAHMIG---LKELGDVVLFDIAEGVPQGKALDIAESSPVDGFDAKFTGA----NSYEAIEGASVVIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYA-PDAFVICITNPLDAMVWALQK-ASGMPAKKVVGMAGVLDSARFRYFLADEFNVSVEDV-TAFVLGGHGDTMVPLVKYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_NITWN (Malate dehydrogenase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 52/202 (25.74%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA++ + ++    +GQIG  L  +I    +      V+  + D  P  ++L+  +   V+     + G    T++ EA  G  + ++  G PRK GM R D++  N+ + +   + + ++A P+  V+ + NP +     L++ A  +PAK +  +   LD +R    ++++ NV V DV    + G H  S  P V ++TV
Sbjct:    1 MARDKIGLI---GSGQIGGTLAHLIG---LKELGDVVMFDIADGVPQGKSLDIAQSSPVEGFDARLAG----TNSYEALEGAGVCIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIRKYA-PDAFVICITNPLDAMVWALQK-ASGLPAKKVVGMAGVLDSSRFRYFLADEFNVSVEDV-TAFVLGGHGDSMVPLVKYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_VIBMA (Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 55/187 (29.41%), Postives = 87/187 (46.52%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 644
            ++V V GAAG IG AL  ++   +  G+D    L + DI P      GV ++L      +     A  D  +A  G ++ ++  G  RK GM+R D+ + N  I K  A    +   PN  + ++ NP NT   I  E    A     + +  +T LD  R+   +SE   + ++DV+  +I G HS
Sbjct:    1 MKVAVLGAAGGIGQALALLLKTQLPAGSD----LSLYDIAPVTP---GVAVDLSHIPTDVTIAGFAGMDPTDALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLAGKCAE-VCPNACIGIITNPVNTTVPIAAEVLKQAGVYDKRKLFGITTLDVIRSETFVSELKGISLADVEVPVI-GGHS 178          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOP2 (Malate dehydrogenase OS=Rhodopseudomonas palustris (strain HaA2) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 53/202 (26.24%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA++ + ++    +GQIG  L  MI    +      V+  + +  P  +AL+  +   VD       G     ++ EA  G ++ ++  G PRK GM R D++S N+ + +   + ++++A P+  V+ + NP +     L++ A  +PAK +  +   LD  R    ++++ NV V DV    + G H  +  P V ++TV
Sbjct:    1 MARDKIALI---GSGQIGGTLAHMIG---LKELGDVVLFDIAEGVPQGKALDIAESSPVDGFDANFTGA----NSYEAIEGASVVIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYA-PDAFVICITNPLDAMVWALQK-ASGMPAKKVVGMAGVLDSARFRYFLADEFNVSVEDV-TAFVLGGHGDTMVPLVKYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOPT (Malate dehydrogenase OS=Rhodopseudomonas palustris (strain TIE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 51/202 (25.25%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA++ + ++    +GQIG  L  ++    +      V+  + +  P  +AL+  +   VD     + G     ++ EA  G  + ++  G PRK GM R D++S N+ + +   + ++++A P+  V+ + NP +     L++ A  +PAK +  +   LD  R    ++++ NV V DV    + G H  +  P V ++TV
Sbjct:    1 MARDKIALI---GSGQIGGTLAHLVG---LKELGDVVLFDIAEGVPQGKALDIAESSPVDGFDSKLTGA----NSYEAIEGARVVIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYA-PDAFVICITNPLDAMVWALQK-ASGLPAKKVVGMAGVLDSARFRYFLADEFNVSVEDV-TAFVLGGHGDTMVPLVKYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOPA (Malate dehydrogenase OS=Rhodopseudomonas palustris GN=mdh PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 51/202 (25.25%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA++ + ++    +GQIG  L  ++    +      V+  + +  P  +AL+  +   VD     + G     ++ EA  G  + ++  G PRK GM R D++S N+ + +   + ++++A P+  V+ + NP +     L++ A  +PAK +  +   LD  R    ++++ NV V DV    + G H  +  P V ++TV
Sbjct:    1 MARDKIALI---GSGQIGGTLAHLVG---LKELGDVVLFDIAEGVPQGKALDIAESSPVDGFDSKLTGA----NSYEAIEGARVVIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYA-PDAFVICITNPLDAMVWALQK-ASGLPAKKVVGMAGVLDSARFRYFLADEFNVSVEDV-TAFVLGGHGDTMVPLVKYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_METSB (Malate dehydrogenase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 52/201 (25.87%), Postives = 92/201 (45.77%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA+  + ++    AGQIG  L  + A   +      V+  + +  P  +AL+  +   V+     +KG  +  D      G ++ ++  G PRK GM R D++  N+ +  A    ++Q+A P+  V+ + NP +     L++ +   PAK +     LD  R    +SE+  V V DV    + G H     P + ++TV
Sbjct:    1 MARSKIALI---GAGQIGGTLAHLAA---LKELGDIVLFDIAEGTPQGKALDLAESGPVEGFNASLKGANSYADIA----GADVIIVTAGVPRKPGMSRDDLLGINLKVMDAVGGGIKQYA-PDAFVICITNPLDAMVWALQKSSGLAPAKIVGMAGVLDSARFRYFLSEEFKVSVEDV-TAFVLGGHGDDMVPSLRYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_METNO (Malate dehydrogenase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 52/201 (25.87%), Postives = 90/201 (44.78%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            MA++ + ++    AGQIG  L  +     +      V+  + D  P  + L+  +   VD       G         A  G ++ ++  G PRK GM R D++  N+ + +A  + ++ HA PN  V+ + NP +     L++F+   P K +     LD  R    ++E+ +V V DV    + G H     P V ++TV
Sbjct:    1 MARKKIALI---GAGQIGGTLAHLAG---LKELGDVVLFDIADGVPQGKGLDIAESAPVDGFDAKYSGA----SDYSAIAGADVVIVTAGVPRKPGMSRDDLIGINLKVMEAVGTGIKTHA-PNAFVICITNPLDAMVWALQKFSGLDPKKIVGMAGVLDSARFRHFLAEEFSVSVEDV-TAFVLGGHGDDMVPLVRYSTV 189          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOSK (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 3
Query:  117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            AGQIG  L  + A   +      V+  + +  P  +AL+  +    +    ++KG     ++ E   G ++ ++  G PRK GM R D++  N+ + K+    ++ HA PN  V+ + NP +     L++F+  +PA+ +  +   LD  R    +S + NV + DV    + G H  +  P V ++TV
Sbjct:   11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFS-GLPAEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_CAUCN3.011e-1127.86Malate dehydrogenase OS=Caulobacter crescentus (st... [more]
MDH_RHOPS3.933e-1126.24Malate dehydrogenase OS=Rhodopseudomonas palustris... [more]
MDH_NITWN3.933e-1125.74Malate dehydrogenase OS=Nitrobacter winogradskyi (... [more]
MDH_VIBMA5.136e-1129.41Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3... [more]
MDH_RHOP25.136e-1126.24Malate dehydrogenase OS=Rhodopseudomonas palustris... [more]
MDH_RHOPT6.708e-1125.25Malate dehydrogenase OS=Rhodopseudomonas palustris... [more]
MDH_RHOPA6.708e-1125.25Malate dehydrogenase OS=Rhodopseudomonas palustris... [more]
MDH_METSB6.708e-1125.87Malate dehydrogenase OS=Methylocella silvestris (s... [more]
MDH_METNO6.708e-1125.87Malate dehydrogenase OS=Methylobacterium nodulans ... [more]
MDH_RHOSK8.761e-1126.46Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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