CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.857e-98
Identity = 164/199 (82.41%), Postives = 187/199 (93.97%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+IS+E+AYHEQLSVAEIT+S FEP++ M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKR IQFVDWCPTG K GINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEKDY
Sbjct:  109 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRNIQFVDWCPTGVKVGINYQPPTVVPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 307
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 4.137e-98
Identity = 166/199 (83.42%), Postives = 186/199 (93.47%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+SS+TASLRFDGALNVD+ EFQTNLVPYPRIHF L++Y P+ISAEKAYHE LSV++ITNS FEP++ M KCDPRHGKYMA CL+YRGDVVPKDVN A+A IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN+T++AE +SR+D+KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  232 VVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 430
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.204e-97
Identity = 166/199 (83.42%), Postives = 187/199 (93.97%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            ++SS+TASLRF+GALNVD+ EFQTNLVPYPRIHF L++YA +ISAEKAYHEQLSV EITN+ FE S+ M KCDPR GKYMACCL+YRGDVVPKDVNAA+A IKT+R+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  109 IVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.738e-96
Identity = 160/199 (80.40%), Postives = 185/199 (92.96%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            ++SS+TASLRF+GALNVD+TEFQTNLVPYPRIHF L++Y+P+ISAEKAYHEQLSV EIT++ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDV A++A +KTKRTIQFVDWCPTGFK GINYQPPTVVPG DLAKV RAVCM+SN+T++AE ++R+DHK DLMYAKRAFVHWYVGEGMEE +FSEAREDLA LEKDY
Sbjct:  234 IVSSITASLRFEGALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVTASIANVKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEGMEERQFSEAREDLATLEKDY 432
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.627e-94
Identity = 156/199 (78.39%), Postives = 184/199 (92.46%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            ++SS+TASLRFDGALNVD+TEFQTNLVP+PRIHF L +YAP+IS+++AYHEQLSVAEIT+S FEP++ M KCDP+ GKYMACC++YRGDVVPKDVN A+A IKT R++QFVDWCPTGFK GINYQPP   PGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEKDY
Sbjct:  231 IVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 429
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.556e-92
Identity = 157/199 (78.89%), Postives = 180/199 (90.45%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAP+ISA KA+HE  SVAEITN+ FEP++ M KCDPR+GKYMA CL+YRGD+V KDVN AV++I+TKRTIQFVDWCPTGFK G+ YQPP  VP GDLAKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  234 VVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPLISAAKAHHEANSVAEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDIVTKDVNCAVSSIRTKRTIQFVDWCPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 2.058e-89
Identity = 154/199 (77.39%), Postives = 178/199 (89.45%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +Y+PVISA+KA HE  SV +IT S FEP++ M KCDPR+GKYMA CL+YRGDVVPK+ +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T+++E +S +DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  234 VVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.688e-89
Identity = 155/199 (77.89%), Postives = 176/199 (88.44%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA HE  SV EI+ S FEP+S M KCDPR+GKYMA CL+YRGDVVPKDV+ AVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S + HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  234 VVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPRNGKYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.334e-88
Identity = 155/199 (77.89%), Postives = 174/199 (87.44%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV E+T S FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  234 VVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 1.129e-87
Identity = 149/199 (74.87%), Postives = 176/199 (88.44%), Query Frame = -3 
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+SS+TASLRFDGALNVD+ EFQTNLVPYPRIHF L++YAPVISA++A+HE LSV +IT+  FE ++ M KCDP  GKYMA CL+YRGDVVPKDVNAA++++K KR I FVDWCPTGFK GINYQ P  V GGDLAKV RAVCM+SN+T++AE ++R+DHKFDLMY+KRAFVHW+VGEGMEEGEF EAR+DLAALEKDY
Sbjct:  237 VVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDY 435
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBA4_CHICK1.857e-9882.41Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CAEEL4.137e-9883.42Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA3_CHICK1.204e-9783.42Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_HOMAM1.738e-9680.40Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA2_CHICK1.627e-9478.39Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_PNECA7.556e-9278.89Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA1_EMENI2.058e-8977.39Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA_MYCGR2.688e-8977.89Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA2_NEUCR1.334e-8877.89Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA8_CAEEL1.129e-8774.87Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
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