CF835922
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.683e-39 Identity = 74/198 (37.37%), Postives = 117/198 (59.09%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ AV I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4) HSP 1 Score: 160.999 bits (406), Expect = 7.422e-39 Identity = 75/199 (37.69%), Postives = 117/199 (58.79%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827 V+S +T LRF G LN D+ + NL+P+PR+HF L +AP+ S + L+V E+T F+ +MMA DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV I NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 232 VMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSVGYRSLTVPELTQQMFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP--------KGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_CAEEL (Tubulin beta-1 chain OS=Caenorhabditis elegans GN=mec-7 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 7.422e-39 Identity = 73/198 (36.87%), Postives = 116/198 (58.59%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + ++V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FVDW P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSNQQYRAITVPELTQQCFDAKNMMAACDPRHGRYLTAAAIFRGRMSMKEVDEQMLNIQNKNSSYFVDWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 7.422e-39 Identity = 73/198 (36.87%), Postives = 116/198 (58.59%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + ++V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FVDW P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSNQQYRAITVPELTQQCFDAKNMMAACDPRHGRYLTAAAIFRGRMSMKEVDEQMLNIQNKNSSYFVDWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 9.693e-39 Identity = 75/192 (39.06%), Postives = 116/192 (60.42%), Query Frame = -3 Query: 252 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 827 V+S +T+SLRF G LN D+ + NLVP+PR+HF + YAP+ + + +VA++T F+P +MMA CDPR+G+Y+ +RG V K+V + I+TK + QF+DW P K + V P G+ + I NST++ ++F R+ F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 232 VMSGITSSLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGYAPLSADGVTAYRAKTVADLTKQMFDPKNMMADCDPRNGRYLTASAYFRGKVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASV----CDVAPTGE----TMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 9.693e-39 Identity = 75/192 (39.06%), Postives = 116/192 (60.42%), Query Frame = -3 Query: 252 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 827 V+S +T+SLRF G LN D+ + NLVP+PR+HF + YAP+ + + +VA++T F+P +MMA CDPR+G+Y+ +RG V K+V + I+TK + QF+DW P K + V P G+ + I NST++ ++F R+ F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 232 VMSGITSSLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGYAPLSADGVTAYRAKTVADLTKQMFDPKNMMADCDPRNGRYLTASAYFRGHVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASV----CDVAPTGE----TMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNM 415
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38 Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T SLRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T F+ +MM DPRHG+Y+ C M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 233 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPP--------KGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38 Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T SLRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T F+ +MM DPRHG+Y+ C M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 233 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMYGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCTSDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPP--------LGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38 Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T SLRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T F+ +MM DPRHG+Y+ C M+RG + K+V+ + ++ K + FV+W P K + PP ++ AV + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 233 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPP--------KGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB6_HUMAN (Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38 Identity = 74/198 (37.37%), Postives = 118/198 (59.60%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T SLRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + I++K + FV+W P K + PP ++ A I NST++ E+F RI +F M+ ++AF+HW+ GEGM+E EF+EA ++ L +Y Sbjct: 233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEY 422 The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 415
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bpback to top |