CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB4_MOUSE (Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  + ++++K +  FV+W P   K  +   PP          ++ A   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  + ++++K +  FV+W P   K  +   PP          ++ A   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  + ++++K +  FV+W P   K  +   PP          ++ A   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  + ++++K +  FV+W P   K  +   PP          ++ A   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.266e-38
Identity = 72/198 (36.36%), Postives = 119/198 (60.10%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ + + A +  L+VAE+T   F+  +MMA CDPRHG+Y+    M+RG +  ++V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I N+T++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSARDAAAYRALNVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMREVDEQMMQVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2C_RAT (Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.653e-38
Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +TA LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTACLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.653e-38
Identity = 72/198 (36.36%), Postives = 118/198 (59.60%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+VAE+T   F+  +MMA CDPRHG+Y+    M+RG +  K+V+  +   + K +  FV+W P   K  +   PP          ++ +V  + N+T++ E+F R+  +F +M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRVLTVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDDQMLNAQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSVTFMGNTTAIQEIFKRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.159e-38
Identity = 72/199 (36.18%), Postives = 121/199 (60.80%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N++P+PR+HF ++ +AP+I+      +  SV+E+T   F+  +MM  CDPR G+Y+    M+RG +  KDV+  ++ +++K +  FV+W P+  K  +    PT         ++ +   + N+TS+ E+F RI  +F +M+ ++AF+HWY GEGM+E EFSEA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFVAGFAPLIAIGTQKFKTYSVSELTQQMFDSKNMMTACDPRKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPSNVKTAVCDIAPT--------GLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMNDLLSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.159e-38
Identity = 73/198 (36.87%), Postives = 116/198 (58.59%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDGKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 74/199 (37.19%), Postives = 116/199 (58.29%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   NL+P+PR+HF L  +AP+ S     +  L+V E+T   F+  +MMA  DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP--------RGLKMAATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBB4_MOUSE1.266e-3836.87Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1... [more]
TBB4_MACFA1.266e-3836.87Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]
TBB4_HUMAN1.266e-3836.87Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1... [more]
TBB4_BOVIN1.266e-3836.87Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S... [more]
TBB1_BRUPA1.266e-3836.36Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1[more]
TBB2C_RAT1.653e-3836.87Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb... [more]
TBB1_ECHMU1.653e-3836.36Tubulin beta-1 chain OS=Echinococcus multiloculari... [more]
TBB_ENCCU2.159e-3836.18Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB1_GADMO2.159e-3836.87Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB_NAEGR2.820e-3837.19Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
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