CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB6_MOUSE (Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I+ K +  FV+W P   K  +   PP          ++ A   I NST++ E+F RI  +F  M+ ++AF+HW+ GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 115/198 (58.08%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+  C M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  D+  L  +Y
Sbjct:  233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLVAEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB5_CHICK (Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I+ K +  FV+W P   K  +   PP          ++ A   I NST++ E+F RI  +F  M+ ++AF+HW+ GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I++K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I++K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I++K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I++K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.820e-38
Identity = 73/198 (36.87%), Postives = 118/198 (59.60%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I++K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.683e-38
Identity = 72/198 (36.36%), Postives = 117/198 (59.09%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  I+ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HW+ GEGM+E EF+EA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEY 422
[Close]
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.683e-38
Identity = 72/198 (36.36%), Postives = 116/198 (58.59%), Query Frame = -3 
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T+ LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ + C I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  208 MSGVTSCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP--------KGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 397
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBB6_MOUSE2.820e-3836.87Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1... [more]
TBB5_GOSHI2.820e-3836.87Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_CHICK2.820e-3836.87Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBB3_RAT2.820e-3836.87Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3... [more]
TBB3_MOUSE2.820e-3836.87Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1... [more]
TBB3_MACFA2.820e-3836.87Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB... [more]
TBB3_HUMAN2.820e-3836.87Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1... [more]
TBB3_BOVIN2.820e-3836.87Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S... [more]
TBB6_BOVIN3.683e-3836.36Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB2_OOMCK3.683e-3836.36Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
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