CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:796..1624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.680e-36
Identity = 72/199 (36.18%), Postives = 114/199 (57.29%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          +  +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGRVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPP--------RGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.680e-36
Identity = 71/198 (35.86%), Postives = 114/198 (57.58%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S     ++  ++ E+T   F+  +MMA CDP HG+Y+    MYRG V  K+V   +   +T+ +  FV+W P   K  +   PP           + A   I N+T++ E+F+R+  +F  M+ +RAF+H++  EGM+E EFSEA  ++  L  +Y
Sbjct:  233 MSGVTTSLRFPGQLNSDLRKLAVNMVPFPRLHFFVPGFAPLASRTSQSYQSCTILELTRQMFDAKNMMAACDPSHGRYLTVAAMYRGRVSMKEVEDRILETQTRNSTYFVEWIPNNVKTAVCDIPP--------IDFKVAGTFIGNTTAIQELFTRVSDQFSAMFRRRAFLHFFTSEGMDEMEFSEAESNMNDLISEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.680e-36
Identity = 71/199 (35.68%), Postives = 114/199 (57.29%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  KDV   +  +  K +  FV+W P   +  +   PP          ++ +   + NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKDVEDQMRNVLNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSFTFVGNSTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_EMENI (Tubulin beta-1 chain OS=Emericella nidulans GN=benA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.680e-36
Identity = 73/199 (36.68%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  I++K    FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAYSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQSYFVEWIPNNIQTALCSIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_TRIRU (Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.003e-35
Identity = 73/199 (36.68%), Postives = 114/199 (57.29%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S ++ SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R G+Y+ C  ++RG V  K+V   +  I+ K +  FV+W P   +  +   PP          +Q +   + NSTS+ E+F R+  +F  M+ K+AF+ WY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVSTSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRNAYSFRAVSVPELTQQMFDPKNMMAATDFRSGRYLTCSAIFRGKVSMKEVEDQMRNIQNKNSAYFVEWIPNNVQTALCSIPP--------RGLQMSSTFVGNSTSIQELFKRVGDQFTAMFRKKAFLFWYTGEGMDEMEFTEAENNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.003e-35
Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF ++ +AP+ +   A +  ++V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP          ++ AV  + NST++ E+F R+  +F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTARGSAQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLTAQCDIPP--------RGLKMAVTFLGNSTAIQELFKRVSDQFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.003e-35
Identity = 69/191 (36.13%), Postives = 111/191 (58.12%), Query Frame = -3
Query:  252 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 824
            +S +T  LRF G LN D+ +   NL+P PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  236 MSGVTCCLRFPGQLNSDLRKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 418          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.003e-35
Identity = 69/199 (34.67%), Postives = 117/199 (58.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S   +    +SV E+T   F+  +MM   + ++G+++ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ A   + NSTSV E+F+R+ ++F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGITVSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRSSSSFRTISVPELTQQMFDSRNMMTAANYQNGRFLTCSTLFRGKVAMKEVEDQMRNMQNKYSSYFVEWIPNNVQTALCSMPP--------KGLKMAATFVGNSTSVQELFNRVSNQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLMSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.003e-35
Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  KDV   +  ++ K +  FV+W P   +  +   PP          ++ +   + N+T++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKDVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNATAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.003e-35
Identity = 71/198 (35.86%), Postives = 112/198 (56.57%), Query Frame = -3
Query:  231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824
            +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T    +  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NSTS+ E+F R+  +F  M+  +AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  201 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMRDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSTSIQEMFRRVRDQFTAMFRXKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 390          
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBB_GIBFU7.680e-3636.18Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB3_ECHMU7.680e-3635.86Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB2_COLGR7.680e-3635.68Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB1_EMENI7.680e-3636.68Tubulin beta-1 chain OS=Emericella nidulans GN=ben... [more]
TBB_TRIRU1.003e-3536.68Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=... [more]
TBB_COPC71.003e-3535.18Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB2_SOLTU1.003e-3536.13Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB2_EMENI1.003e-3534.67Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB2_COLGL1.003e-3535.18Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB2_ANEPH1.003e-3535.86Tubulin beta-2 chain (Fragment) OS=Anemia phylliti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
back to top