CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 70/199 (35.18%), Postives = 118/199 (59.30%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  ++V E+T+  F+  +MMA  DPRHG+Y+     +RG V  K+V   + ++++K +  FV+W P      +      + P G    ++ +V  I NST++ ++F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTARGSQQYRAVTVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQSKNSNYFVEWIPN----NVQTAHCDIAPRG----LKMSVTFIGNSTAIQDLFKRIADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLVAEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 70/199 (35.18%), Postives = 113/199 (56.78%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF ++ +AP+ +     +  ++V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP          V+ AV  + NST++ E+F R+   F  M+ ++AF+HWY  EGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLSAQCDIPP--------RGVKMAVTFLGNSTAIQELFKRVSDHFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLIAEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S LT   RF G LN D+ +   NLVP+PR+HF    +AP+ +A  A ++ L VAE+T   F+P ++M+  D R+G+++ C  +YRG V  K +   +  ++ K +  FV+W P   +      PP          +  +   I NST++ ++F R+  +F +M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  235 VMSGLTTGFRFPGQLNADLRKLAVNLVPFPRLHFFTVGFAPLTTA--AAYQNLGVAELTQQMFDPKNVMSASDFRNGRFLTCSAIYRGKVSTKQIEEQIRGVQAKNSAYFVEWIPNNVQTAHCSIPPV--------GMNASSTFIGNSTAIQDIFRRVGDQFSVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 423          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.978e-35
Identity = 72/201 (35.82%), Postives = 116/201 (57.71%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDV-TEFQTNLVPYPRIHFMLSSYAPVIS-AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+      NLVP+PR+HF +  +AP+ S   + Y + LSVA++T   F+  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  F++W P   K  I   PP          ++ +V  I N+T + E+F R+  +F  M+ ++ F+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTCCLRFPGQLNSDLRNRLAVNLVPFPRLHFFMMGFAPLTSRGSQEYRQGLSVADVTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPP--------KGLKMSVTFIGNNTCIQEMFRRVGEQFTGMFRRKRFLHWYTGEGMDEMEFTEAESNMNDLVSEY 424          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.978e-35
Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K    FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQQKNVSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.978e-35
Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+ C   +RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.502e-35
Identity = 69/199 (34.67%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVHEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.502e-35
Identity = 69/199 (34.67%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.502e-35
Identity = 69/199 (34.67%), Postives = 115/199 (57.79%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827
            V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  232 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVHEY 422          
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBB_PESMI3.812e-3535.18Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB_MELLI3.812e-3535.18Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB1_SUIBO3.812e-3535.18Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB1_COLGL3.812e-3535.18Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]
TBB_LEIME4.978e-3535.82Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB_ERYGR4.978e-3535.18Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB_COCHE4.978e-3535.18Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB_UNCNE6.502e-3534.67Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB_BOTFU6.502e-3534.67Tubulin beta chain OS=Botryotinia fuckeliana GN=tu... [more]
TBB2_ERYPI6.502e-3534.67Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
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