CF835922
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 6.085e-33 Identity = 67/198 (33.84%), Postives = 109/198 (55.05%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T LRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ A I NS+S+ E+F R M+ ++AF+HWY EGM+E EF+E ++ L +Y Sbjct: 29 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNMNDLVSEY 218
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 6.085e-33 Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827 V+ ++ SLRF G LN D+ + NLVP+PR+HF++ S+AP + ++LSV+E+T+S F+ +++ DPR G+Y+ ++RG V + +V ++ K + FV+W P + PP P +A ++NST + E+F R +F LM+ +RAF+HWY GEGM+ EF+EA + L +Y Sbjct: 236 VMCGVSTSLRFPGQLNGDLRKLGMNLVPFPRLHFLMPSFAPFYDPKARTFQRLSVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESNTQDLISEY 426
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.356e-32 Identity = 66/199 (33.17%), Postives = 112/199 (56.28%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 827 V+S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S ++V E+T ++P +MM D R+G+Y+ ++RG V K+V + ++ K FV+W P + + PP ++ + + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 233 VMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAYSFRVVTVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 423
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29 Identity = 61/198 (30.81%), Postives = 110/198 (55.56%), Query Frame = -3 Query: 231 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 824 +S +T LRF G LN + + N+VP+PR+HF++ +AP+++ ++ + +V+E+ F ++++ D R GK + ++RG + P++V+ + ++ K FVDW P K I PP ++ + I N+T++ +F R+ M ++A +HWY GEGMEE EF +A+++L A+ DY Sbjct: 232 MSGITTCLRFPGQLNAGLRKIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPP--------RGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAIIDDY 421
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.820e-27 Identity = 56/161 (34.78%), Postives = 93/161 (57.76%), Query Frame = -3 Query: 231 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 713 +AP+ S + L+V+E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 1 FAPLTSRGSQQYRALTVSELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 153
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.452e-26 Identity = 64/200 (32.00%), Postives = 110/200 (55.00%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAALEKDY 827 ++ SLT+S RF+G+LN+D+ E NLVP+P++H+++SS P+ + + ++ + AF + + DPRH Y+AC L+ RG+V D+ + +K +QFV W G+K + PP ++ ++N+T V F + +F +Y K+A +H Y+ +GMEE F+EA L+AL ++Y Sbjct: 265 LLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEY 454
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.476e-26 Identity = 64/200 (32.00%), Postives = 111/200 (55.50%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAALEKDY 827 ++ +LT+S RF+G+LN+D+ E NLVP+P++H+++SS P+ + + ++ + AF + + DP+H Y+AC LM RG+V D+ + +K ++QFV W G+K + PP ++ ++N+T V F + +F +Y K+A +H Y+ EGMEE F+EA L+AL ++Y Sbjct: 265 LLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEY 454
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.244e-22 Identity = 58/207 (28.02%), Postives = 113/207 (54.59%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAALEKDY 827 V+++ T +LR+ G +N D+ +LVP PR HF+++S+ P VI + ++ SV ++ +P ++M C + G Y++ + RGDV P D++ ++ I+ K+ + F+ W P + ++ Q P A V V CM++N +++ +F+RI +D++ + AF++ Y E ++ EF +A+E + L ++Y Sbjct: 234 VMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNLIEEY 431
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.030e-20 Identity = 58/201 (28.86%), Postives = 107/201 (53.23%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME-EGEFSEAREDLAALEKDY 827 V+S+ T +LR+ G +N D+ +L+P P+ HF+++ Y P+ I + + SV ++ +P ++M + GKY++ + +GDV P ++ ++ I+ KR F+DW P + ++ + P + ++ + M++N TSV +FS I ++D + K+AF+ Y E E EF ARE L L ++Y Sbjct: 232 VMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGPASIQIALSKKSPYIKSSHKVSGL-----MLANHTSVNHLFSHIIQQYDKVRKKQAFLANYTRESGEILQEFDIAREMLDDLVQEY 427
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.482e-18 Identity = 54/195 (27.69%), Postives = 100/195 (51.28%), Query Frame = -3 Query: 267 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC--MISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM-----EEGEFSE 827 V+S+ T +LR+ G++N D+ ++L+ P+ HF+++SY P+ I + ++ +V ++ ++M R G Y++ + RG+ P V+ + I+ ++ + F+ W P + + Q P VV Q VC M++N TS++ +F R +FD +Y +RAF+ Y E M +G F E Sbjct: 236 VMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVRRGMYISILNIIRGETDPTQVHKGLQRIRDRKLVNFIKWNPASIQVTLAKQSPHVVS-------QHKVCGLMMANHTSISTLFERCVTQFDRLYKRRAFLENYKKESMFSSADGQGNFEE 423 The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 415
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bpback to top |