CF835922
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.744e-17 Identity = 58/206 (28.16%), Postives = 105/206 (50.97%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYH-EQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDY 827 VI++ T +LR+ G +N D+ +L+P PR HF+++SY P S +KA + +V ++ +P + M P + Y++ + +G+V P DV+ ++ I+ ++ F+ W P + + + P V ++ + M++N TSVA +F R+ +FD + + AF+ Y E M EF +AR L K+Y Sbjct: 234 VIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRMVLTTPSKTACYISILNIIQGEVDPTDVHQSLLRIRERQLANFIPWGPASIQVALTKRSPYVTTNHRVSGL-----MLANHTSVASLFKRMLDQFDRLRKRNAFIEQYKKEKMFANGLEEFDDARATCDELLKEY 434
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17 Identity = 59/208 (28.37%), Postives = 105/208 (50.48%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVI--SAEKAYH-EQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAALEKDY 827 V+S+ T +LR+ G ++ D+ +L+P PR HF+++SY P E+A + +V ++ +P + M P + Y++ + +GDV P DV+ ++ I+ +R F+ W P + + + P V ++ + M++N TS+A +F RI ++D M + AF+ Y E + EF EARE + L DY Sbjct: 235 VMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTPFTGDQVEQAKTVRKTTVLDVMRRLLQPKNRMVSTVPGKKSCYISILNVIQGDVDPTDVHKSLLRIRERRLATFIPWGPASIQVALTKRSPYVTMAHRVSGL-----MLANHTSIATLFKRIVRQYDGMRKRNAFMEAYKKTAPFSENL--NEFDEAREVVMDLIADY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17 Identity = 56/208 (26.92%), Postives = 103/208 (49.52%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSS---MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827 V+S+ T +LR+ G +N D+ +L+P PR HF+ +SY P S + + +V ++ +P + M RH Y++ + +G+V P DV+ ++ I+ + + F+ W P + + Q P V ++ + M++N T++A +F R ++D + + AF+ Y E M E EF EAR + L ++Y Sbjct: 234 VMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVSMPTTPSRHACYISILNIIQGEVDPTDVHKSLLRIRERNSATFIPWGPASIQVALTKQSPYVQTTHKVSGL-----MLANHTNIASIFKRTVAQYDQLRKRNAFMPQYQKEAMFEKNLDEFDEARATVQDLIEEY 436
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.323e-16 Identity = 51/206 (24.76%), Postives = 105/206 (50.97%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDY 827 V+S+ T +LR+ G +N D+ +L+P PR HF+ +SY P S + + +V ++ +P + M +P + +++ + +G+ P DV+ ++ I+ ++ F+ W P + ++ + P + ++ + M++N TS+A +F R ++D + + AF+ Y E + E EF +RE +A L ++Y Sbjct: 235 VMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNPGKQSCFISILNIIQGEADPNDVHKSLLRIRERKLATFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLDQYRKESIFENSLDEFDNSREVVADLIREY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16 Identity = 52/206 (25.24%), Postives = 104/206 (50.49%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827 V+S+ T +LR+ G +N D+ +L+P PR HF+L+SY P + E + +V ++ P + M +P + +++ + +G+ P DV+ ++ I+ +R F+ W P + ++ + P + ++ + M++N TS+A +F R ++D + + AF+ Y E + E EF +R+ +A L +Y Sbjct: 235 VMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16 Identity = 56/207 (27.05%), Postives = 105/207 (50.72%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV----ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG-MEEG--EFSEAREDLAALEKDY 827 V+S+ T +LR+ G ++ D+ +L+P PR HF+L+SY P I K + +V ++ +P + M +P + Y++ + +G+ P DV+ ++ I+ +R F+ W P + + + P + ++ + M++N TSVA +F RI ++D + + AF+ Y E ++G EF EAR + L +Y Sbjct: 234 VMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTPFTGDNIDQAKTV-RKTTVLDVMRRLLQPKNRMVSINPSKSSCYISILNIIQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGL-----MLANHTSVATLFKRIVQQYDRLRKRNAFLEQYKKEAPFQDGLDEFDEARAVVMDLVGEY 434
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16 Identity = 50/211 (23.70%), Postives = 106/211 (50.24%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQL------SVAEITNSAFEPSSMMAKCDP---RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDLAALEKDY 827 ++S T +LR+ +N ++ L+P P++HF+++ Y P+ S + +QL +V ++ +P +MM P H Y++ + +G+V P V+ ++ I+ ++ QF+ W PT + ++ P V ++ + M++N TS+ +F R +++D + + AF+ + E + + E E+RE + L ++Y Sbjct: 235 IMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGL-----MLANHTSICSLFERALNQYDKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLVQEY 440
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.967e-15 Identity = 50/209 (23.92%), Postives = 108/209 (51.67%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 827 V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ + + + +V ++ + ++M R+ KY++ + +G+V P V+ ++ I+ ++ + F+DW P + ++ + P V ++ + M+++ TS+ +FSR ++D + K+AF+ Y M + EF E+R+ + +L +Y Sbjct: 235 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL-----MLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEY 438
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.569e-15 Identity = 50/209 (23.92%), Postives = 107/209 (51.20%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 827 V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ + + + +V ++ + ++M R KY++ + +G+V P V+ ++ I+ ++ + F+DW P + ++ + P V ++ + M++N TS+ +FS+ +++ + K+AF+ Y M + EF E+RE + +L +Y Sbjct: 187 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEY 390
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.355e-15 Identity = 49/209 (23.44%), Postives = 109/209 (52.15%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY----VGEGMEEGEFSEAREDLAALEKDY 827 V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ + + + +V ++ + ++M R+ KY++ + +G+V P V+ ++ I+ ++ + F++W P + ++ + P V ++ + M++N TS+ +FS+ +++ + K+AF+ Y + E + EF E+RE + +L +Y Sbjct: 235 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFEDNDLSEFDESREIIESLVDEY 438 The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 415
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bpback to top |