CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.744e-17
Identity = 58/206 (28.16%), Postives = 105/206 (50.97%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYH-EQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDY 827
            VI++ T +LR+ G +N D+     +L+P PR HF+++SY P  S   +KA    + +V ++     +P + M    P +   Y++   + +G+V P DV+ ++  I+ ++   F+ W P   +  +  + P V     ++ +     M++N TSVA +F R+  +FD +  + AF+  Y  E M      EF +AR     L K+Y
Sbjct:  234 VIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRMVLTTPSKTACYISILNIIQGEVDPTDVHQSLLRIRERQLANFIPWGPASIQVALTKRSPYVTTNHRVSGL-----MLANHTSVASLFKRMLDQFDRLRKRNAFIEQYKKEKMFANGLEEFDDARATCDELLKEY 434          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 59/208 (28.37%), Postives = 105/208 (50.48%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVI--SAEKAYH-EQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAALEKDY 827
            V+S+ T +LR+ G ++ D+     +L+P PR HF+++SY P      E+A    + +V ++     +P + M    P +   Y++   + +GDV P DV+ ++  I+ +R   F+ W P   +  +  + P V     ++ +     M++N TS+A +F RI  ++D M  + AF+  Y       E +   EF EARE +  L  DY
Sbjct:  235 VMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTPFTGDQVEQAKTVRKTTVLDVMRRLLQPKNRMVSTVPGKKSCYISILNVIQGDVDPTDVHKSLLRIRERRLATFIPWGPASIQVALTKRSPYVTMAHRVSGL-----MLANHTSIATLFKRIVRQYDGMRKRNAFMEAYKKTAPFSENL--NEFDEAREVVMDLIADY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 56/208 (26.92%), Postives = 103/208 (49.52%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSS---MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827
            V+S+ T +LR+ G +N D+     +L+P PR HF+ +SY P  S    +     + +V ++     +P +    M     RH  Y++   + +G+V P DV+ ++  I+ + +  F+ W P   +  +  Q P V     ++ +     M++N T++A +F R   ++D +  + AF+  Y  E M E    EF EAR  +  L ++Y
Sbjct:  234 VMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVSMPTTPSRHACYISILNIIQGEVDPTDVHKSLLRIRERNSATFIPWGPASIQVALTKQSPYVQTTHKVSGL-----MLANHTNIASIFKRTVAQYDQLRKRNAFMPQYQKEAMFEKNLDEFDEARATVQDLIEEY 436          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.323e-16
Identity = 51/206 (24.76%), Postives = 105/206 (50.97%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDY 827
            V+S+ T +LR+ G +N D+     +L+P PR HF+ +SY P  S    +     + +V ++     +P + M   +P +   +++   + +G+  P DV+ ++  I+ ++   F+ W P   +  ++ + P +     ++ +     M++N TS+A +F R   ++D +  + AF+  Y  E + E    EF  +RE +A L ++Y
Sbjct:  235 VMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNPGKQSCFISILNIIQGEADPNDVHKSLLRIRERKLATFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLDQYRKESIFENSLDEFDNSREVVADLIREY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 52/206 (25.24%), Postives = 104/206 (50.49%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827
            V+S+ T +LR+ G +N D+     +L+P PR HF+L+SY P  +    E     + +V ++      P + M   +P +   +++   + +G+  P DV+ ++  I+ +R   F+ W P   +  ++ + P +     ++ +     M++N TS+A +F R   ++D +  + AF+  Y  E + E    EF  +R+ +A L  +Y
Sbjct:  235 VMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16
Identity = 56/207 (27.05%), Postives = 105/207 (50.72%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV----ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG-MEEG--EFSEAREDLAALEKDY 827
            V+S+ T +LR+ G ++ D+     +L+P PR HF+L+SY P     I   K    + +V ++     +P + M   +P +   Y++   + +G+  P DV+ ++  I+ +R   F+ W P   +  +  + P +     ++ +     M++N TSVA +F RI  ++D +  + AF+  Y  E   ++G  EF EAR  +  L  +Y
Sbjct:  234 VMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTPFTGDNIDQAKTV-RKTTVLDVMRRLLQPKNRMVSINPSKSSCYISILNIIQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGL-----MLANHTSVATLFKRIVQQYDRLRKRNAFLEQYKKEAPFQDGLDEFDEARAVVMDLVGEY 434          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16
Identity = 50/211 (23.70%), Postives = 106/211 (50.24%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQL------SVAEITNSAFEPSSMMAKCDP---RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDLAALEKDY 827
            ++S  T +LR+   +N ++      L+P P++HF+++ Y P+ S    + +QL      +V ++     +P +MM    P    H  Y++   + +G+V P  V+ ++  I+ ++  QF+ W PT  +  ++   P V     ++ +     M++N TS+  +F R  +++D +  + AF+  +  E +   +  E  E+RE +  L ++Y
Sbjct:  235 IMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGL-----MLANHTSICSLFERALNQYDKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLVQEY 440          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.967e-15
Identity = 50/209 (23.92%), Postives = 108/209 (51.67%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 827
            V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R+      KY++   + +G+V P  V+ ++  I+ ++ + F+DW P   +  ++ + P V     ++ +     M+++ TS+  +FSR   ++D +  K+AF+  Y    M    +  EF E+R+ + +L  +Y
Sbjct:  235 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL-----MLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEY 438          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.569e-15
Identity = 50/209 (23.92%), Postives = 107/209 (51.20%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 827
            V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F+DW P   +  ++ + P V     ++ +     M++N TS+  +FS+   +++ +  K+AF+  Y    M    +  EF E+RE + +L  +Y
Sbjct:  187 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEY 390          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.355e-15
Identity = 49/209 (23.44%), Postives = 109/209 (52.15%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY----VGEGMEEGEFSEAREDLAALEKDY 827
            V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R+      KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V     ++ +     M++N TS+  +FS+   +++ +  K+AF+  Y    + E  +  EF E+RE + +L  +Y
Sbjct:  235 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFEDNDLSEFDESREIIESLVDEY 438          
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBG_COPC72.744e-1728.16Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG_NEUCR4.681e-1728.37Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG_USTVI6.114e-1726.92Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]
TBG_SCHJP2.323e-1624.76Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG_SCHPO3.034e-1625.24Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG_EMENI8.828e-1627.05Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG1_DROME8.828e-1623.70Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG2_ARATH1.967e-1523.92Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG3_MAIZE2.569e-1523.92Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG2_ORYSJ3.355e-1523.44Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
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