CF835922
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13 Identity = 47/206 (22.82%), Postives = 104/206 (50.49%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827 ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++M + Y+A + +G+V P V+ ++ I+ ++ F+ W P + ++ + P + ++ + M++N TS++ +F +FD + + AF+ + E M + F E +RE + L +Y Sbjct: 235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13 Identity = 46/206 (22.33%), Postives = 105/206 (50.97%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827 ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++M + Y+A + +G+V P V+ ++ I+ ++ F+ W P + ++ + P + ++ + M++N TS++ +F R ++D + + AF+ + E + + F E +RE + L +Y Sbjct: 235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDIFKENFDELDTSREVVHQLIDEY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13 Identity = 56/206 (27.18%), Postives = 100/206 (48.54%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS----AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV-GEGMEEG--EFSEAREDLAALEKDY 827 V+SS+T SLRF + + + LVP P +HF+ S+ P S K + ++LS ++ F+ ++ M D Y+A +G V DV A+ +KT++ I+F W PT + + P + M++N++S+ VF + FD+++ + AF+H + G+ + G EF E+RE + + +Y Sbjct: 235 VMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDF-KRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAI--LKTQQRIKFAPWSPTSLHVNLGRKSPY---NSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLHKFQNGKMFQHGWDEFLESREVIQGVIDEY 434
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13 Identity = 45/206 (21.84%), Postives = 105/206 (50.97%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827 ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++M + Y+A + +G+V P V+ ++ I+ ++ F+ W P + ++ + P + ++ + M++N T+++ +F R ++D + + AF+ + E + + F E +RE + L +Y Sbjct: 235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTNISSLFERTCRQYDKLRKREAFLEQFRKEDIFKDNFDELDNSREIVQQLIDEY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13 Identity = 45/206 (21.84%), Postives = 105/206 (50.97%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827 ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++M + Y+A + +G+V P V+ ++ I+ ++ F+ W P + ++ + P + ++ + M++N TS++ +F ++D ++ + AF+ + E + + F E +RE + L +Y Sbjct: 235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFESSCQQYDKLWKRGAFLEQFRKEDIFKDNFEEMHRSREVVQELIDEY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13 Identity = 45/206 (21.84%), Postives = 104/206 (50.49%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827 ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++M + Y+A + +G+V P V+ ++ I+ ++ F+ W P + ++ + P + ++ + M++N TS++ +F ++D + + AF+ + E + + F E +RE + L +Y Sbjct: 235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFESSCQQYDKLRKREAFLEQFRKEDIFKDNFDELDRSREVVQELIDEY 435
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12 Identity = 46/203 (22.66%), Postives = 101/203 (49.75%), Query Frame = -3 Query: 234 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP--VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 827 V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P +I + + +V ++ + ++MA + G YM+ + +GDV P V+ ++ I+ ++ F+ W P + ++ + P + G ++ + M++N T + +F I ++ + A+++ + + E EF + E + +L +D Sbjct: 232 VMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGL-----MLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKSLIED 429
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.558e-12 Identity = 54/208 (25.96%), Postives = 103/208 (49.52%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY-VGEGME-----EGEFSEAREDLAALEKDY 827 +ISS+T S+RF + ++ + L+P P +HF+ S+ P S + H+ S ++ +PS+ + + Y G+V P+ ++ A+ K ++ I+F W + I + P + + +V + M+SN ++V VF + FD ++AK AF++ Y VG+ + + EF+E+RE + +L +DY Sbjct: 234 IISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMT--KLQQRIKFPSWSSSAMHVNIGRRSPYLPLQPNENEV--SGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNYNVGDLFQSMQNVQDEFAESREVVQSLMEDY 437
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.558e-12 Identity = 51/225 (22.67%), Postives = 112/225 (49.78%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE------QLSVAEITNSAFEPSSMMAKC-----DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA----KRAFVHWY-----------VGEGMEEGEFSEAREDLAALEKDY 827 V+++ T +LR+ G +N D+ +L+P PR HF+++ Y P ++AE A + + +V ++ +P ++M D + KY++ + +G+V P V+ ++ I+ ++ F++W P + ++ + P V ++ + M++N TSV +F+++ ++ + ++AF+ Y G + E EF++A+E + L +Y Sbjct: 235 VMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLANHTSVRHLFNKVLRDYEKLMGPKQERQAFMQAYRDVPRFADAAGGGTALLE-EFADAKEVVQDLANEY 452
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.035e-12 Identity = 44/204 (21.57%), Postives = 103/204 (50.49%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827 V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P +S ++ ++ + +V ++ + ++M + G YM+ + +GDV P V+ ++ I+ ++ F+ W P + ++ + P + G ++ + M++N T + +F + ++ + A+++ + + E EF + E + +L +Y Sbjct: 232 VMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKFNSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGL-----MLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKSLIDEY 429 The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 415
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bpback to top |