CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 47/206 (22.82%), Postives = 104/206 (50.49%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827
            ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P   +  ++ + P +     ++ +     M++N TS++ +F     +FD +  + AF+  +  E M +  F E   +RE +  L  +Y
Sbjct:  235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 46/206 (22.33%), Postives = 105/206 (50.97%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827
            ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P   +  ++ + P +     ++ +     M++N TS++ +F R   ++D +  + AF+  +  E + +  F E   +RE +  L  +Y
Sbjct:  235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDIFKENFDELDTSREVVHQLIDEY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 56/206 (27.18%), Postives = 100/206 (48.54%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS----AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV-GEGMEEG--EFSEAREDLAALEKDY 827
            V+SS+T SLRF   +   +    + LVP P +HF+  S+ P  S      K + ++LS  ++    F+ ++ M   D     Y+A     +G V   DV  A+  +KT++ I+F  W PT     +  + P             +  M++N++S+  VF +    FD+++ + AF+H +  G+  + G  EF E+RE +  +  +Y
Sbjct:  235 VMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDF-KRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAI--LKTQQRIKFAPWSPTSLHVNLGRKSPY---NSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLHKFQNGKMFQHGWDEFLESREVIQGVIDEY 434          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 45/206 (21.84%), Postives = 105/206 (50.97%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827
            ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P   +  ++ + P +     ++ +     M++N T+++ +F R   ++D +  + AF+  +  E + +  F E   +RE +  L  +Y
Sbjct:  235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTNISSLFERTCRQYDKLRKREAFLEQFRKEDIFKDNFDELDNSREIVQQLIDEY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13
Identity = 45/206 (21.84%), Postives = 105/206 (50.97%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827
            ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P   +  ++ + P +     ++ +     M++N TS++ +F     ++D ++ + AF+  +  E + +  F E   +RE +  L  +Y
Sbjct:  235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFESSCQQYDKLWKRGAFLEQFRKEDIFKDNFEEMHRSREVVQELIDEY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 45/206 (21.84%), Postives = 104/206 (50.49%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827
            ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P   +  ++ + P +     ++ +     M++N TS++ +F     ++D +  + AF+  +  E + +  F E   +RE +  L  +Y
Sbjct:  235 IMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFESSCQQYDKLRKREAFLEQFRKEDIFKDNFDELDRSREVVQELIDEY 435          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 46/203 (22.66%), Postives = 101/203 (49.75%), Query Frame = -3
Query:  234 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP--VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 827
            V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P  +I  +     + +V ++     +  ++MA    + G YM+   + +GDV P  V+ ++  I+ ++   F+ W P   +  ++ + P +  G  ++ +     M++N T +  +F  I  ++     + A+++ +    + E    EF  + E + +L +D
Sbjct:  232 VMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGL-----MLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKSLIED 429          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.558e-12
Identity = 54/208 (25.96%), Postives = 103/208 (49.52%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY-VGEGME-----EGEFSEAREDLAALEKDY 827
            +ISS+T S+RF   +   ++   + L+P P +HF+  S+ P  S    +   H+  S  ++     +PS+ +      +  Y        G+V P+ ++ A+   K ++ I+F  W  +     I  + P +    +  +V  +  M+SN ++V  VF    + FD ++AK AF++ Y VG+  +     + EF+E+RE + +L +DY
Sbjct:  234 IISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMT--KLQQRIKFPSWSSSAMHVNIGRRSPYLPLQPNENEV--SGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNYNVGDLFQSMQNVQDEFAESREVVQSLMEDY 437          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.558e-12
Identity = 51/225 (22.67%), Postives = 112/225 (49.78%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE------QLSVAEITNSAFEPSSMMAKC-----DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA----KRAFVHWY-----------VGEGMEEGEFSEAREDLAALEKDY 827
            V+++ T +LR+ G +N D+     +L+P PR HF+++ Y P ++AE A  +      + +V ++     +P ++M        D  + KY++   + +G+V P  V+ ++  I+ ++   F++W P   +  ++ + P V     ++ +     M++N TSV  +F+++   ++ +      ++AF+  Y            G  + E EF++A+E +  L  +Y
Sbjct:  235 VMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLANHTSVRHLFNKVLRDYEKLMGPKQERQAFMQAYRDVPRFADAAGGGTALLE-EFADAKEVVQDLANEY 452          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.035e-12
Identity = 44/204 (21.57%), Postives = 103/204 (50.49%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827
            V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P +S ++ ++   + +V ++     +  ++M     + G YM+   + +GDV P  V+ ++  I+ ++   F+ W P   +  ++ + P +  G  ++ +     M++N T +  +F  +  ++     + A+++ +    + E    EF  + E + +L  +Y
Sbjct:  232 VMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKFNSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGL-----MLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKSLIDEY 429          
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBG2_HUMAN2.404e-1322.82Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=... [more]
TBG1_CANFA2.404e-1322.33Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG_ASHGO3.140e-1327.18Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG1_XENLA3.140e-1321.84Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBG2_MOUSE5.356e-1321.84Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG2_BOVIN9.136e-1321.84Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 ... [more]
TBG1_EUPCR1.193e-1222.66Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_YEAST1.558e-1225.96Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_CHLRE1.558e-1222.67Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG1_EUPOC2.035e-1221.57Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
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