CF835923
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2) HSP 1 Score: 324.324 bits (830), Expect = 4.390e-88 Identity = 148/252 (58.73%), Postives = 195/252 (77.38%), Query Frame = 2 Query: 2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757 ANN++RGHYT+GKE+VD +DR+R+L+DNC+ LQGFLVF++ +YGKKSKL F VYPSP+VST+VVEPYN+VLSTHS +E++D L+DNEA+YDICRR+LDI RP++ +LNRL++QV+SS+T+SLRFDGALNVD+ EFQTNLVP+PRIH+ L SYAPVIS+ ++ HE V ++T EP++ M CDPR+GKYMA L+YRGD VP+D A+A++K K + V+WCPTGF Sbjct: 102 ANNYARGHYTVGKELVDTVVDRVRRLSDNCSSLQGFLVFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPSPRVSTAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSFEHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGF 353
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 5.046e-68 Identity = 116/140 (82.86%), Postives = 135/140 (96.43%), Query Frame = 2 Query: 338 ICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757 IC+R+LDIERP+YTNLNRL+SQV+SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKAYHEQL+VAE+T++ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGF Sbjct: 1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF 140
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.504e-67 Identity = 118/253 (46.64%), Postives = 179/253 (70.75%), Query Frame = 2 Query: 2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757 ++NF++G T + +++ +D IRK +NCTGLQGF ++N+V Y KK+KL ++PSP++S+ VVEPYN+VL+TH++++ + ++DNE+IY IC++ L + P+Y +LN+L++Q +SS+TASLRF+G LNVD+ EF TNLVP+PR HF + SYAP+++ EKA + LSV E+T+S F+P+S+M +CD GK+M+CC+MYRGDV ++VN AV+ IK + T+ FV WCP F Sbjct: 106 SSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSF 357
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.984e-64 Identity = 115/148 (77.70%), Postives = 132/148 (89.19%), Query Frame = 2 Query: 314 LDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757 +DNEAIYDICRR+L IERP YTNLNRL++ V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE SV+EITN+ FEP++ M KCDPR+GKYMA CL+YRGDVV KDVNAAVA ++TKRTIQFVDWCPTGF Sbjct: 1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGF 148
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2) HSP 1 Score: 233.802 bits (595), Expect = 3.935e-63 Identity = 110/163 (67.48%), Postives = 136/163 (83.44%), Query Frame = 2 Query: 2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPY 490 ANN++ GHYTIGKE +DL LDRIRKLAD CTGLQGFLVF+++ V+YGKKSKLGF++YP+PQVST++V+PYNS+L+TH+ LEH+D A ++DN+AIYDIC +LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLV Y Sbjct: 39 ANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSY 201 HSP 2 Score: 29.6462 bits (65), Expect = 3.935e-63 Identity = 17/38 (44.74%), Postives = 21/38 (55.26%), Query Frame = 3 Query: 498 STSCFPPMHQSSQLRRPTMNNSQLLRSPTVPLSPHL*W 611 STS +PPMHQSS +R T ++ R P LS W Sbjct: 204 STSPWPPMHQSSLQKRYTTSSCWWQRLPMPALSLPTRW 241
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.166e-56 Identity = 106/248 (42.74%), Postives = 152/248 (61.29%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++GHYT G E+VD LD IRK A+ C LQGF +++ +Y + F+V PSP+VS +VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + ++VAE+T F+ +MMA CDPRHG+Y+ ++RG + KDV+ + I+ K + FVDW P Sbjct: 99 NNWAKGHYTEGAELVDSVLDVIRKEAEACDCLQGFQFTHSLGGGTGSGMGTLLISKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSNQQYRAVTVAELTQQLFDAKNMMAACDPRHGRYLTAAAIFRGRMSMKDVDEQMLNIQNKNSAYFVDWIP 346
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56 Identity = 103/248 (41.53%), Postives = 154/248 (62.10%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++GHYT G E++D LD +RK A+ C LQGF + +++ +Y + F+V+PSP+VS +VVEPYN+ LS H L+E+ D ++DNEA+YDIC R+L + PTY +LN LVS +S +T SLRF G LN D+ + NL+P+PR+HF + +AP+ S H LSVAE+T F+ +MM DPR G+Y+ C M+RG + K+V+ ++ ++ K + FV+W P Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQHRALSVAELTQQMFDAKNMMCASDPRRGRYLTACAMFRGRMSTKEVDEQMSMVQNKNSSYFVEWIP 346
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56 Identity = 101/248 (40.73%), Postives = 155/248 (62.50%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++GHYT G E++D LD +RK A+NC LQGF V +++ +Y + L F+V+PSP+VS +VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + PT+ +LN L+S +S +T LRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T ++ +MM DPRHG+Y+ C M+RG + K+V+ + ++ K + FV+W P Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP 346
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 2.598e-56 Identity = 103/248 (41.53%), Postives = 154/248 (62.10%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++GHYT G E+VD LD +RK A++C LQGF + +++ +Y + + F+V PSP+VS +VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P Sbjct: 99 NNWAKGHYTEGAELVDNVLDVVRKEAESCDCLQGFQMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 5.787e-56 Identity = 103/248 (41.53%), Postives = 154/248 (62.10%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++GHYT G E+VD LD IRK A++C LQGF + +++ +Y + + ++V PSP+VS +VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + LSV E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P Sbjct: 99 NNWAKGHYTEGAELVDSVLDVIRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMVTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346 The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 421
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bpback to top |