CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 4.390e-88
Identity = 148/252 (58.73%), Postives = 195/252 (77.38%), Query Frame = 2
Query:    2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            ANN++RGHYT+GKE+VD  +DR+R+L+DNC+ LQGFLVF++                   +YGKKSKL F VYPSP+VST+VVEPYN+VLSTHS +E++D   L+DNEA+YDICRR+LDI RP++ +LNRL++QV+SS+T+SLRFDGALNVD+ EFQTNLVP+PRIH+ L SYAPVIS+ ++ HE   V ++T    EP++ M  CDPR+GKYMA  L+YRGD VP+D   A+A++K K +   V+WCPTGF
Sbjct:  102 ANNYARGHYTVGKELVDTVVDRVRRLSDNCSSLQGFLVFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPSPRVSTAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSFEHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGF 353          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.046e-68
Identity = 116/140 (82.86%), Postives = 135/140 (96.43%), Query Frame = 2
Query:  338 ICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            IC+R+LDIERP+YTNLNRL+SQV+SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKAYHEQL+VAE+T++ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGF
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF 140          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.504e-67
Identity = 118/253 (46.64%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            ++NF++G  T  + +++  +D IRK  +NCTGLQGF ++N+V                   Y KK+KL   ++PSP++S+ VVEPYN+VL+TH++++  +   ++DNE+IY IC++ L +  P+Y +LN+L++Q +SS+TASLRF+G LNVD+ EF TNLVP+PR HF + SYAP+++ EKA  + LSV E+T+S F+P+S+M +CD    GK+M+CC+MYRGDV  ++VN AV+ IK + T+ FV WCP  F
Sbjct:  106 SSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSF 357          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.984e-64
Identity = 115/148 (77.70%), Postives = 132/148 (89.19%), Query Frame = 2
Query:  314 LDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            +DNEAIYDICRR+L IERP YTNLNRL++ V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV+EITN+ FEP++ M KCDPR+GKYMA CL+YRGDVV KDVNAAVA ++TKRTIQFVDWCPTGF
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGF 148          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 3.935e-63
Identity = 110/163 (67.48%), Postives = 136/163 (83.44%), Query Frame = 2
Query:    2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPY 490
            ANN++ GHYTIGKE +DL LDRIRKLAD CTGLQGFLVF+++                 V+YGKKSKLGF++YP+PQVST++V+PYNS+L+TH+ LEH+D A ++DN+AIYDIC  +LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLV Y
Sbjct:   39 ANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSY 201          

HSP 2 Score: 29.6462 bits (65), Expect = 3.935e-63
Identity = 17/38 (44.74%), Postives = 21/38 (55.26%), Query Frame = 3
Query:  498 STSCFPPMHQSSQLRRPTMNNSQLLRSPTVPLSPHL*W 611
            STS +PPMHQSS  +R T ++    R P   LS    W
Sbjct:  204 STSPWPPMHQSSLQKRYTTSSCWWQRLPMPALSLPTRW 241          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.166e-56
Identity = 106/248 (42.74%), Postives = 152/248 (61.29%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD IRK A+ C  LQGF   +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  ++VAE+T   F+  +MMA CDPRHG+Y+    ++RG +  KDV+  +  I+ K +  FVDW P
Sbjct:   99 NNWAKGHYTEGAELVDSVLDVIRKEAEACDCLQGFQFTHSLGGGTGSGMGTLLISKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSNQQYRAVTVAELTQQLFDAKNMMAACDPRHGRYLTAAAIFRGRMSMKDVDEQMLNIQNKNSAYFVDWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56
Identity = 103/248 (41.53%), Postives = 154/248 (62.10%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E++D  LD +RK A+ C  LQGF + +++                  +Y  +    F+V+PSP+VS +VVEPYN+ LS H L+E+ D   ++DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   NL+P+PR+HF +  +AP+ S     H  LSVAE+T   F+  +MM   DPR G+Y+  C M+RG +  K+V+  ++ ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQHRALSVAELTQQMFDAKNMMCASDPRRGRYLTACAMFRGRMSTKEVDEQMSMVQNKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56
Identity = 101/248 (40.73%), Postives = 155/248 (62.50%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+  C M+RG +  K+V+  +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.598e-56
Identity = 103/248 (41.53%), Postives = 154/248 (62.10%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD +RK A++C  LQGF + +++                  +Y  +  + F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDNVLDVVRKEAESCDCLQGFQMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.787e-56
Identity = 103/248 (41.53%), Postives = 154/248 (62.10%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD IRK A++C  LQGF + +++                  +Y  +  + ++V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  LSV E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDSVLDVIRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMVTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBA2_EMENI4.390e-8858.73Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_OCTVU5.046e-6882.86Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBA1_ENTHI2.504e-6746.64Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBAA_PNECA1.984e-6477.70Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA4B_HUMAN3.935e-6367.48Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBB_ONCGI1.166e-5642.74Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE... [more]
TBB_BABBO1.989e-5641.53Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]
TBB5_GOSHI1.989e-5640.73Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB4_CAEEL2.598e-5641.53Tubulin beta-4 chain OS=Caenorhabditis elegans GN=... [more]
TBB2_ECHMU5.787e-5641.53Tubulin beta-2 chain OS=Echinococcus multiloculari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
back to top