CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_ASPFU (Tubulin beta chain OS=Aspergillus fumigatus GN=AFUA_7G00250 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.022e-52
Identity = 97/248 (39.11%), Postives = 153/248 (61.69%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  +D +R+ A++C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+EH D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +TAS RF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+  +MM  C+ ++G+++ C  ++RG +  K+V+  + +I TK +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDQVIDVVRREAESCDYLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVLPSPKVSDTVVEPYNATLSVHQLVEHADETFCIDNEALYDICTRTLKLSSPSYGDLNHLVSTVMSGITASFRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAQSFRAMSVPELTQQMFDSRNMMTACNFQNGRFLTCSALFRGKISMKEVDDQMLSIHTKNSGYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.022e-52
Identity = 99/248 (39.92%), Postives = 151/248 (60.89%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.334e-52
Identity = 99/248 (39.92%), Postives = 151/248 (60.89%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDNVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.334e-52
Identity = 99/248 (39.92%), Postives = 151/248 (60.89%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGRVAMKEVEDQMRNVQNKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_ENTDO (Tubulin beta chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.334e-52
Identity = 99/248 (39.92%), Postives = 150/248 (60.48%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD IRK  + C  +QGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDI  R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +   SV+++T   F+  +MM  CDPRHG+Y+    ++RG +  K+V+  + +I+ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDTVLDVIRKECEGCECIQGFQMTHSLGGGTGAGMGTLLISKYREEYPDRIMTTFSVMPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYDISLRTLKLPNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQDYRMHSVSDLTQQLFDAKNMMTACDPRHGRYLTVAAVFRGKMSMKEVDEQMFSIQNKMSPYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.742e-52
Identity = 100/248 (40.32%), Postives = 150/248 (60.48%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        L+V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   + +++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDSVLDVVRREAEACDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLPDPGYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFIVGFAPLTSKGSHSFRSLTVPELTQQMFDAKNMMAASDPRHGRYLTVAAIFRGRVSMKEVEDQMHSVQQKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.742e-52
Identity = 98/248 (39.52%), Postives = 150/248 (60.48%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+VD  LD +RK A+    LQGF + +++                  +Y  +    ++V PSP VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  PTY +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF ++ +AP+ +     +  ++V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLMSKIREEYPDRMMCTYSVVPSPAVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSFVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.276e-52
Identity = 99/250 (39.60%), Postives = 156/250 (62.40%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV-TEFQTNLVPYPRIHFMLSSYAPVIS-AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E++D  LD  RK A++C  LQGF + +++                  +Y  +  + F+V PSP+VS +VVEPYN+ LS H L+E++D ++ +DNEA+YDIC R+L +  PT+ +LN LV+ V+S +T  LRF G LN D+      NLVP+PR+HF +  +AP+ S   + Y + LSVA++T   F+  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  F++W P
Sbjct:   99 NNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQLSHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVIPSPRVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVAAVMSGVTCCLRFPGQLNSDLRNRLAVNLVPFPRLHFFMMGFAPLTSRGSQEYRQGLSVADVTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIP 348          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.276e-52
Identity = 96/248 (38.71%), Postives = 152/248 (61.29%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E+++  +D IRK ++ C  LQGF + +++                  +Y  +    ++V PSP+VS +VVEPYN  LS H L+E+ D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T SLRF G LN D+ +   NLVP+PR+HF +  +AP+ S     +  ++V ++T   F+  +MMA CDP++G+Y+     +RG +  K+V+  +  I+ K++  FV+W P
Sbjct:   99 NNWAKGHYTEGAELIESAMDIIRKESEQCECLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNCTLSIHQLVENADEVFCIDNEALYDICFRTLKLVTPSYGDLNHLVSAVMSGITCSLRFPGQLNADLRKLAVNLVPFPRLHFFMVGFAPLGSRGSQQYRSMTVNDLTQQMFDSKNMMAACDPKNGRYLTAAAYFRGKISTKEVDDQMIEIQNKQSEHFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.276e-52
Identity = 94/248 (37.90%), Postives = 151/248 (60.89%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E++D  LD +RK A+NC  LQGF + +++                  +Y  +  L F+V+  P+ S +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L++ E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P
Sbjct:   99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIP 346          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBB_ASPFU1.022e-5239.11Tubulin beta chain OS=Aspergillus fumigatus GN=AFU... [more]
TBB_ACRCO1.022e-5239.92Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB_METAN1.334e-5239.92Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]
TBB_GIBFU1.334e-5239.92Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB_ENTDO1.334e-5239.92Tubulin beta chain OS=Enteroctopus dofleini PE=2 S... [more]
TBB_PNECA1.742e-5240.32Tubulin beta chain OS=Pneumocystis carinii GN=TUB-... [more]
TBB1_SUIBO1.742e-5239.52Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_LEIME2.276e-5239.60Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBBN_GUITH2.276e-5238.71Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]
TBB1_SOYBN2.276e-5237.90Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
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