CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.286e-51
Identity = 95/248 (38.31%), Postives = 151/248 (60.89%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G YT G E++D  +D IR+ A+    LQGF + +++                  +Y  +    ++V PSP+VS +V EPYN+VLS H L+++ D    LDNEA+YDIC ++L I RP++ +LN L++ V+S +T  LR+ G LN D+ +   NLVP+PR+HF  + +AP+ +        L+V E+T   F P+++MA C+P HG+Y+    ++RG V  K+V  A+ T +TK +  FV+W P
Sbjct:  101 NNWAKGFYTEGAELMDSVMDIIRREAEQSESLQGFQLAHSLGGGTGSGLGTLLLTKIREEYPDRMLSTYSVLPSPKVSDTVTEPYNAVLSFHQLIDNADATYCLDNEALYDICEKTLKINRPSHQDLNSLIALVMSGVTTGLRYPGQLNGDLRKLAVNLVPFPRLHFFTTGFAPLFAKNSRAFHNLTVPELTQQLFNPANVMAACNPYHGRYLTISTIFRGQVAMKEVEDAIHTARTKYSPYFVEWIP 348          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.292e-51
Identity = 96/248 (38.71%), Postives = 149/248 (60.08%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G YT G E+++  +D +RK A++C  LQGF + +++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H L+E+ D    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+VAE+T   F+  +MMA  DPRHG Y+    ++RG +  ++V+  +  I+ K +  F DW P
Sbjct:   99 NNWAKGRYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSRTLKLPTPTYGDLNHLVSATVSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSQGSQQYRALTVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.605e-51
Identity = 95/248 (38.31%), Postives = 150/248 (60.48%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G YT G E++D  L  +RK A+NC  LQGF V +++                  +Y  +  + F+V+ SP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDI  R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P
Sbjct:   99 NNWAKGXYTEGAELIDSVLAVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFASPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIXLRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYXSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.782e-50
Identity = 93/249 (37.35%), Postives = 151/249 (60.64%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPT 751
            NN+++GHYT G E++D  +D +RK A++   LQGF + +++                  D+  +    F+V PSP+VS +VVEPYN+ LS H L+E+ D    +DNEA+YD+C R+L +  P Y +LN LVS V+S +T  LRF G LN  + +   N++P+PR+HF +  +AP+ +      +  SV+E+T   F+  +MM  CDP+ G+Y+    M+RG +  KDV+  ++ +++K +  FV+W P+
Sbjct:   99 NNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSLGGGTGAGMGTLLLSKIREDFPDRMICTFSVVPSPKVSDTVVEPYNATLSIHQLVENADETFCIDNEALYDMCFRTLKLNNPGYGDLNHLVSLVMSGVTTCLRFPGQLNAYLRKLAVNMIPFPRLHFFVVGFAPLTAVGTQKFKTYSVSELTQQMFDSKNMMTACDPKKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPS 347          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.633e-50
Identity = 96/248 (38.71%), Postives = 149/248 (60.08%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G E++D  LD +RK A++C  LQGF + +++                  +Y  +  + F+V PSP+VS +VVEPYN+ LS H L+E+ D  + + NEA+YDIC  +L +  PT+ +   LVS V+S +T  LRF G LN D+ +   NL+P+PR+HF L  +AP+ S     +  L+V E+T   F+  +MMA  DP HG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P
Sbjct:   97 NNWAKGHYTEGPELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVIPSPKVSDTVVEPYNTTLSVHQLVENADEVMCIGNEALYDICLPTLKLTTPTFGH-ETLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAASDPAHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIP 343          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.057e-49
Identity = 93/248 (37.50%), Postives = 148/248 (59.68%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G YT G E+ +  +D +RK A++C  LQGF + +++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H L+E+ D    +DNEA+YDIC ++L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+VAE+T   F+  +M A  DPRHG+Y+    +++G +  ++V+  +  I+ K +  F DW P
Sbjct:   27 NNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMVTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFP 274          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.526e-48
Identity = 91/248 (36.69%), Postives = 149/248 (60.08%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            N +++GHYT G E+ D  LD +R+ A+ C  LQGF + +++                  +Y  +    F+V P+P+ S +VVEPYN+ LS H L+E++D    +DNEA+  I   +L I+ P+Y +LN LVS V++ +T S RF G LN D+ +   N+VP+PR+HF +  +AP+ +   +  + +SV E+T   F+ ++MM   DPRHG+Y+    ++RG V  K+V+  + +++TK +  FV+W P
Sbjct:   99 NIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.441e-48
Identity = 90/248 (36.29%), Postives = 146/248 (58.87%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++GHYT G ++++  LD +RK A+ C  LQGF + +++                  +Y  +    ++V PSP VS +VVEPYN+ LS + L+E++  +  +DNEA+Y IC R+L +  PTY  LN LVS  +S +T  LRF G LN D+ +   N++P+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDP  G+Y+    ++RG +  K+++  +  ++ K    FV+W P
Sbjct:   99 NNWAKGHYTEGADLLETVLDVVRKEAEGCDCLQGFQLVHSLGGGTGSGMGTLLLANLTDEYPDRITATYSVVPSPTVSETVVEPYNATLSVNQLIENSIQSYCIDNEALYYICHRTLKLMAPTYGALNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPHRGRYLTVATVFRGRMSMKEIDEQILNVQKKNKDFFVEWIP 346          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.441e-48
Identity = 93/249 (37.35%), Postives = 147/249 (59.04%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFT-VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            N +++GHYT G E+VD  +D +R+ A+ C  LQGF + +++                  ++  +    F+ V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MM   D R+G+Y+    ++RG V  K+V   +  ++ K    FV+W P
Sbjct:   99 NTWAKGHYTEGSELVDQVIDVVRREAERCDCLQGFQIIHSLGGGTGAGMGTLLISKIREEFPDRMMATFSSVVPSPKVSDTVVEPYNATLSNHQLVENSDETFCIDNEALYDICMRTLKLSEPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAYSFRVVTVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIP 347          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.894e-48
Identity = 89/248 (35.89%), Postives = 153/248 (61.69%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G+YT G E++D  LD +R+  +    LQGF + +++                  +Y  +    F++ P+P VS +VVEPYNS+LS H L+++ D+ + +DNEA+YDI  R+L I+ P Y +LN+L+++V+  ++ SLRF G LN D+ +   NLVP+PR+HF++ S+AP    +    ++LSV+E+T+S F+  +++   DPR G+Y+    ++RG V   +   +V  ++ K +  FV+W P
Sbjct:  103 NNWAKGYYTEGAELIDGILDIVRRQCEATEALQGFQMIHSLGGGTGAGLGSLLLSKLREEYPDRMLSTFSILPAPNVSETVVEPYNSLLSIHQLVDNCDLTICIDNEALYDIAVRTLKIKSPGYKDLNQLIAKVMCGVSTSLRFPGQLNGDLRKLGMNLVPFPRLHFLMPSFAPFYDPKARTFQRLSVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIP 350          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBB2_GEOCN3.286e-5138.31Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]
TBB4Q_HUMAN4.292e-5138.71Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB1_ANEPH5.605e-5138.31Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_ENCIN2.782e-5037.35Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_EUGGR3.633e-5038.71Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
YI016_HUMAN1.057e-4937.50Putative tubulin beta chain-like protein ENSP00000... [more]
TBB_SCHPO1.526e-4836.69Tubulin beta chain OS=Schizosaccharomyces pombe GN... [more]
TBB_BOMMO4.441e-4836.29Tubulin beta chain OS=Bombyx mori PE=2 SV=1[more]
TBB_AJECA4.441e-4837.35Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB2_SUIBO9.894e-4835.89Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
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