CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.840e-45
Identity = 81/180 (45.00%), Postives = 119/180 (66.11%), Query Frame = 2
Query:  209 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P
Sbjct:   12 FSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 191          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.478e-43
Identity = 79/189 (41.80%), Postives = 123/189 (65.08%), Query Frame = 2
Query:  182 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ DV ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T SLRF G LN D+ +    L+P+PR+HF +  +AP+ S     +  LSV E+T   ++  +MM   DPRHG+Y+    M+R  +  KD++  +  ++ K +  FV+W P
Sbjct:   26 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVILIPFPRLHFFMVGFAPLTSRGSQQYRSLSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFREKMSTKDLDEQMINVQNKNSSYFVEWIP 214          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.917e-40
Identity = 76/248 (30.65%), Postives = 139/248 (56.05%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NNF+RG++T G  I+D  L+  R+  ++   LQGF + +++                   Y       +   PSP +S  VVEPYN++LST +L+ ++ +   LDNEA++ IC R+L ++   Y ++N +V+  +S +T  LRF G LN  + +   N+VP+PR+HF++  +AP+++ ++    + +V+E+    F  ++++   D R GK +    ++RG + P++V+  +  ++ K    FVDW P
Sbjct:   98 NNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFCLDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLRKIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIP 345          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.415e-31
Identity = 77/249 (30.92%), Postives = 132/249 (53.01%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G Y  G+   D   D I + AD    L+GFL+ +++                   + KK    ++V+P    S+ VV+ YNSVL+   L+E+ D  V+LDN A++ I   +L I++PT    N LVS V+S+ T +LR+ G +N D+     +L+P P+ HF+++ Y P+ I  +     + SV ++     +P ++M     + GKY++   + +GDV P  ++ ++  I+ KR   F+DW P
Sbjct:  102 NNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSYILERLNDRFPKKIIQTYSVFPDD--SSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGP 347          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.707e-29
Identity = 72/278 (25.90%), Postives = 137/278 (49.28%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            NN++ GH   G    D  L++ RK A++C  LQ F + +++                  ++ +  +   ++YPS +    +  PYNS+L+   L EH D  + +DN++++DI  + +D+                            +  +  +N +V+ ++ +LT+S RF+G+LN+D+ E   NLVP+P++H+++SS  P+ +          + ++ + AF     + + DP+H  Y+AC LM RG+V   D+   +  +K   ++QFV W   G+
Sbjct:  107 NNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGEDDV-ITSPYNSILAMKELNEHADCVLPIDNQSLFDIISK-IDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGW 380          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.029e-28
Identity = 55/142 (38.73%), Postives = 88/142 (61.97%), Query Frame = 2
Query:  323 EAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            EA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P
Sbjct:    1 EALYDICFRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIP 142          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.343e-28
Identity = 72/250 (28.80%), Postives = 134/250 (53.60%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G YT   E  +  +D I +  DN   L+GF++ +++                   Y KK    ++V+P+    +SVV  PYNSVL+   L+ + D  V++DN +++ I    L ++  ++   N ++S V+++ T +LR+ G +N D+     +LVP PR HF+++S+ P VI   +   ++ SV ++     +P ++M  C  + G Y++   + RGDV P D++ ++  I+ K+ + F+ W P
Sbjct:  102 NNWAVG-YTHATEKYEHIMDMIDR-EDNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGP 349          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 73/278 (26.26%), Postives = 135/278 (48.56%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            NN++ GH   G    +  L+++RK A+ C  LQ F + +++                  ++ +  +    VYPS +    +  PYNS+L+   L EH D  + +DN++++DI  + +D+                            +  +  +N +V+ ++ SLT+S RF+G+LN+D+ E   NLVP+P++H+++SS  P+ +          + ++ + AF     + + DPRH  Y+AC L+ RG+V   D+   +  +K    +QFV W   G+
Sbjct:  107 NNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSEDDV-ITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISK-IDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGW 380          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.909e-28
Identity = 73/252 (28.97%), Postives = 135/252 (53.57%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYH-EQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G Y+ G+ I +  ++ I + A+    L+GF+V +++                   + KK    ++V+P+ Q    VV+PYNS+L+   L+ H D  V+LDN A+  I    L ++ P++   N+LVS VI++ T +LR+ G +N D+     +L+P PR HF+++SY P  S   +KA    + +V ++     +P + M    P +   Y++   + +G+V P DV+ ++  I+ ++   F+ W P
Sbjct:  102 NNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRMVLTTPSKTACYISILNIIQGEVDPTDVHQSLLRIRERQLANFIPWGP 352          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.668e-28
Identity = 70/254 (27.56%), Postives = 129/254 (50.79%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSS---MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G Y  G+ + +  ++ I + A+    L+GF++ +++                   Y KK    ++V+P       VV+PYNS+LS   L  H D  ++LDN A+  IC+  L ++  ++   N+LVS V+S+ T +LR+ G +N D+     +L+P PR HF+ +SY P  S    +     + +V ++     +P +    M     RH  Y++   + +G+V P DV+ ++  I+ + +  F+ W P
Sbjct:  102 NNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVSMPTTPSRHACYISILNIIQGEVDPTDVHKSLLRIRERNSATFIPWGP 354          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBB_STRPU7.840e-4545.00Tubulin beta chain (Fragment) OS=Strongylocentrotu... [more]
TBB1_DAUCA1.478e-4341.80Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]
TBBP_DROME9.917e-4030.65Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBG_DICDI8.415e-3130.92Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBE_HUMAN2.707e-2925.90Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBB3_ANEPH1.029e-2838.73Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBG_RETFI1.343e-2828.80Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBE_MOUSE1.755e-2826.26Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_COPC73.909e-2828.97Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG_USTVI6.668e-2827.56Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
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