CF835923
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 7.840e-45 Identity = 81/180 (45.00%), Postives = 119/180 (66.11%), Query Frame = 2 Query: 209 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 F+V PSP+VS +VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P Sbjct: 12 FSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 191
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 1.478e-43 Identity = 79/189 (41.80%), Postives = 123/189 (65.08%), Query Frame = 2 Query: 182 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 +Y + L F+V+PSP+VS +VVEPYN+ LS H L+E+ DV ++LDNEA+YDIC R+L + P++ +LN L+S +S +T SLRF G LN D+ + L+P+PR+HF + +AP+ S + LSV E+T ++ +MM DPRHG+Y+ M+R + KD++ + ++ K + FV+W P Sbjct: 26 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVILIPFPRLHFFMVGFAPLTSRGSQQYRSLSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFREKMSTKDLDEQMINVQNKNSSYFVEWIP 214
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 9.917e-40 Identity = 76/248 (30.65%), Postives = 139/248 (56.05%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NNF+RG++T G I+D L+ R+ ++ LQGF + +++ Y + PSP +S VVEPYN++LST +L+ ++ + LDNEA++ IC R+L ++ Y ++N +V+ +S +T LRF G LN + + N+VP+PR+HF++ +AP+++ ++ + +V+E+ F ++++ D R GK + ++RG + P++V+ + ++ K FVDW P Sbjct: 98 NNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFCLDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLRKIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIP 345
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.415e-31 Identity = 77/249 (30.92%), Postives = 132/249 (53.01%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN++ G Y G+ D D I + AD L+GFL+ +++ + KK ++V+P S+ VV+ YNSVL+ L+E+ D V+LDN A++ I +L I++PT N LVS V+S+ T +LR+ G +N D+ +L+P P+ HF+++ Y P+ I + + SV ++ +P ++M + GKY++ + +GDV P ++ ++ I+ KR F+DW P Sbjct: 102 NNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSYILERLNDRFPKKIIQTYSVFPDD--SSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGP 347
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.707e-29 Identity = 72/278 (25.90%), Postives = 137/278 (49.28%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757 NN++ GH G D L++ RK A++C LQ F + +++ ++ + + ++YPS + + PYNS+L+ L EH D + +DN++++DI + +D+ + + +N +V+ ++ +LT+S RF+G+LN+D+ E NLVP+P++H+++SS P+ + + ++ + AF + + DP+H Y+AC LM RG+V D+ + +K ++QFV W G+ Sbjct: 107 NNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGEDDV-ITSPYNSILAMKELNEHADCVLPIDNQSLFDIISK-IDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGW 380
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.029e-28 Identity = 55/142 (38.73%), Postives = 88/142 (61.97%), Query Frame = 2 Query: 323 EAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 EA+YDIC R+L + PT+ +LN L+S +S +T LRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P Sbjct: 1 EALYDICFRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIP 142
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.343e-28 Identity = 72/250 (28.80%), Postives = 134/250 (53.60%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN++ G YT E + +D I + DN L+GF++ +++ Y KK ++V+P+ +SVV PYNSVL+ L+ + D V++DN +++ I L ++ ++ N ++S V+++ T +LR+ G +N D+ +LVP PR HF+++S+ P VI + ++ SV ++ +P ++M C + G Y++ + RGDV P D++ ++ I+ K+ + F+ W P Sbjct: 102 NNWAVG-YTHATEKYEHIMDMIDR-EDNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGP 349
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28 Identity = 73/278 (26.26%), Postives = 135/278 (48.56%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757 NN++ GH G + L+++RK A+ C LQ F + +++ ++ + + VYPS + + PYNS+L+ L EH D + +DN++++DI + +D+ + + +N +V+ ++ SLT+S RF+G+LN+D+ E NLVP+P++H+++SS P+ + + ++ + AF + + DPRH Y+AC L+ RG+V D+ + +K +QFV W G+ Sbjct: 107 NNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSEDDV-ITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISK-IDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGW 380
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.909e-28 Identity = 73/252 (28.97%), Postives = 135/252 (53.57%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYH-EQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++G Y+ G+ I + ++ I + A+ L+GF+V +++ + KK ++V+P+ Q VV+PYNS+L+ L+ H D V+LDN A+ I L ++ P++ N+LVS VI++ T +LR+ G +N D+ +L+P PR HF+++SY P S +KA + +V ++ +P + M P + Y++ + +G+V P DV+ ++ I+ ++ F+ W P Sbjct: 102 NNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRMVLTTPSKTACYISILNIIQGEVDPTDVHQSLLRIRERQLANFIPWGP 352
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.668e-28 Identity = 70/254 (27.56%), Postives = 129/254 (50.79%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSS---MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++G Y G+ + + ++ I + A+ L+GF++ +++ Y KK ++V+P VV+PYNS+LS L H D ++LDN A+ IC+ L ++ ++ N+LVS V+S+ T +LR+ G +N D+ +L+P PR HF+ +SY P S + + +V ++ +P + M RH Y++ + +G+V P DV+ ++ I+ + + F+ W P Sbjct: 102 NNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVSMPTTPSRHACYISILNIIQGEVDPTDVHKSLLRIRERNSATFIPWGP 354 The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 421
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bpback to top |