CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.668e-28
Identity = 73/256 (28.52%), Postives = 134/256 (52.34%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G++  G++ VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F+DW P
Sbjct:   54 NNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAP 307          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.668e-28
Identity = 70/255 (27.45%), Postives = 133/255 (52.16%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G++  G+++VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F+DW P
Sbjct:  102 NNWASGYHQ-GEQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAP 355          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.485e-27
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 2
Query:  575 ITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            ITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGF
Sbjct:    1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF 61          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.940e-27
Identity = 73/259 (28.19%), Postives = 135/259 (52.12%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQL------SVAEITNSAFEPSSMMAKCDP---RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPT 751
            NN++ G Y+ G+++ +   D I + AD    L+GF++ +++                   Y KK    F+V+P+  ++S  VV+PYNS+L+   L    D  V+LDN A+  I    L I+ P+++ +N LVS ++S  T +LR+   +N ++      L+P P++HF+++ Y P+ S    + +QL      +V ++     +P +MM    P    H  Y++   + +G+V P  V+ ++  I+ ++  QF+ W PT
Sbjct:  102 NNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPT 359          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.309e-27
Identity = 67/251 (26.69%), Postives = 131/251 (52.19%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP--SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+  G Y+ G ++ +  +D I +  DN   L+GF++ +++                  +Y KK    F+V+P  + + S  VV+PYNS+L+   L+  TD  V++DN ++  I    L +  PT+   N ++S V+S+ T +LR+ G++N D+    ++L+  P+ HF+++SY P+ I    +  ++ +V ++        ++M     R G Y++   + RG+  P  V+  +  I+ ++ + F+ W P
Sbjct:  102 NNWGCG-YSQGHKVEEEIIDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVRRGMYISILNIIRGETDPTQVHKGLQRIRDRKLVNFIKWNP 351          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.309e-27
Identity = 70/255 (27.45%), Postives = 134/255 (52.55%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G++  G+++VD  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R+      KY++   + +G+V P  V+ ++  I+ ++ + F++W P
Sbjct:  102 NNWASGYHQ-GEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGP 355          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.322e-27
Identity = 72/260 (27.69%), Postives = 135/260 (51.92%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE------QLSVAEITNSAFEPSSMMAKC-----DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G YT G+ + +  LD I + A+ C  L+GF + +++                   Y KK    ++V+P+   S+ VV +PYNS+L+   L  H D  V+LDN A+  I    L + +P    +N L++ V+++ T +LR+ G +N D+     +L+P PR HF+++ Y P ++AE A  +      + +V ++     +P ++M        D  + KY++   + +G+V P  V+ ++  I+ ++   F++W P
Sbjct:  102 NNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGP 359          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.644e-27
Identity = 72/253 (28.46%), Postives = 127/253 (50.20%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV----ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+  G Y  G+ + +   D I + AD    L+GF+  +++                   + KK    ++V+P  Q +  VV PYNS+L+   L ++ D  V+LDN A+  I    L ++ P++   NRLVS V+S+ T +LR+ G ++ D+     +L+P PR HF+L+SY P     I   K    + +V ++     +P + M   +P +   Y++   + +G+  P DV+ ++  I+ +R   F+ W P
Sbjct:  102 NNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSFQQTNRLVSTVMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTPFTGDNIDQAKTV-RKTTVLDVMRRLLQPKNRMVSINPSKSSCYISILNIIQGEADPTDVHKSLLRIRERRLASFIPWGP 352          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 72/256 (28.12%), Postives = 133/256 (51.95%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G++  G++ VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F+ W P
Sbjct:  102 NNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIYWAP 355          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.628e-27
Identity = 70/255 (27.45%), Postives = 132/255 (51.76%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G++  GK + +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R+      KY++   + +G+V P  V+ ++  I+ ++ + F+DW P
Sbjct:  102 NNWASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGP 355          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBG3_MAIZE6.668e-2828.52Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG2_MAIZE6.668e-2827.45Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBA_LYTPI1.485e-2785.25Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBG1_DROME1.940e-2728.19Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG_PLAFO3.309e-2726.69Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG2_ORYSJ3.309e-2727.45Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG_CHLRE4.322e-2727.69Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG_EMENI5.644e-2728.46Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG1_MAIZE7.372e-2728.13Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG2_ARATH9.628e-2727.45Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
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