CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.151e-26
Identity = 69/253 (27.27%), Postives = 136/253 (53.75%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G ++ G++I +   D I + AD    L+GF++ +++                   Y KK    ++V+P   ++S  VV+PYNS+L+   L ++ D  V+LDN A+  I    L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P
Sbjct:  102 NNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.151e-26
Identity = 69/253 (27.27%), Postives = 137/253 (54.15%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G ++ G++I +   D I + AD    L+GF++ +++                   Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN A+  I    L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P
Sbjct:  102 NNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.064e-25
Identity = 69/253 (27.27%), Postives = 137/253 (54.15%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G ++ G++I +   D I + AD    L+GF++ +++                   Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN A+  I    L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P
Sbjct:  102 NNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.064e-25
Identity = 69/253 (27.27%), Postives = 137/253 (54.15%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G ++ G++I +   D I + AD    L+GF++ +++                   Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN A+  I    L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P
Sbjct:  102 NNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.390e-25
Identity = 70/255 (27.45%), Postives = 131/255 (51.37%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH-EQLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G++  G+++ +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L I  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A    + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++   F++W P
Sbjct:  102 NNWASGYHQ-GEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGP 355          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.390e-25
Identity = 69/250 (27.60%), Postives = 130/250 (52.00%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP--VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+ RG Y   +++ +  ++ I + AD    L+GF++ +++                   Y KK    ++V+P+   +  VV+PYN +LS   L+ + D  V+LDN A+  I    L + +PT+  +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P  +I  +     + +V ++     +  ++MA    + G YM+   + +GDV P  V+ ++  I+ ++   F+ W P
Sbjct:  102 NNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPNE--NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGP 348          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 68/253 (26.88%), Postives = 135/253 (53.36%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G ++ G++I +   D I + AD    L+GF++ +++                   Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN  +  I    L I+ P++  +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P
Sbjct:  102 NNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.045e-25
Identity = 70/253 (27.67%), Postives = 130/253 (51.38%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G Y   ++I +  +D I + A+    L+GF + +++                   + KK    ++V+P+ + VS  VV+PYNS+L+   L  + D  V+LDN A+  I    L I+ PT+   N+LVS V+S+ T +LR+ G +N D+     +L+P PR HF+ +SY P  S    +     + +V ++     +P + M   +P +   +++   + +G+  P DV+ ++  I+ ++   F+ W P
Sbjct:  102 NNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNPGKQSCFISILNIIQGEADPNDVHKSLLRIRERKLATFIPWGP 353          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.177e-24
Identity = 70/256 (27.34%), Postives = 132/256 (51.56%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLE-HTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH-EQLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G++  G+++ +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+ +  L  + D  V+LDN A+  I    L I  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A    + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++   F++W P
Sbjct:  102 NNWASGYHQ-GEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGP 356          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.537e-24
Identity = 67/254 (26.38%), Postives = 136/254 (53.54%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYHEQLSVAEITNSAFEPSSMM--AKCDPRHGK-YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN++ G ++ G+++ +   D + + AD    L+GF++ +++                   + KK    ++V+P+  ++S  VV+PYNS+L+   L +  D  V+LDN A+  I    L I+ PT+T +N LVS ++S  T +LR+   +N ++     +L+P P++HF+++ Y P++S    K    + +V ++     +P +MM  A  D +  + +++   + +G+V P  V+ ++  I+ ++   F+ W P
Sbjct:  102 NNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGP 354          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBG2_HUMAN8.151e-2627.27Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=... [more]
TBG1_XENLA8.151e-2627.27Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBG1_RAT1.064e-2527.27Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE1.064e-2527.27Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBG_PHYPA1.390e-2527.45Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG1_EUPCR1.390e-2527.60Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG1_CANFA2.371e-2526.88Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG_SCHJP4.045e-2527.67Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG_ANEPH1.177e-2427.34Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG2_DROME1.537e-2426.38Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
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