CF835923
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.008e-24 Identity = 68/250 (27.20%), Postives = 127/250 (50.80%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748 NN+++G Y G + + ++ I + AD L+GF++ +++ Y KK ++V+P+ + VV+PYN +LS L+ + D V+LDN AI I L + PT + +N +VS V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ ++ + +V ++ + ++M + G YM+ + +GDV P V+ ++ I+ + F+ W P Sbjct: 102 NNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERNVANFIPWGP 348
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23 Identity = 75/253 (29.64%), Postives = 126/253 (49.80%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS----AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPT 751 N +S G Y G E D ++ I K D +GF + ++V Y KK ++V+PS + S VV+PYN++L+ L++++D +VL DN+A+ ++ R L +Y N+L++ V+SS+T SLRF + + + LVP P +HF+ S+ P S K + ++LS ++ F+ ++ M D Y+A +G V DV A+ +KT++ I+F W PT Sbjct: 104 NTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDF-KRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAI--LKTQQRIKFAPWSPT 351
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.102e-22 Identity = 66/250 (26.40%), Postives = 119/250 (47.60%), Query Frame = 2 Query: 5 NNFSRGHYTIGK--EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVY--PSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 742 N+++ G+YT K EI ++ I + ++C L+GF +++ Y K F+V +P V VV PYNS+L+ L+ V+ DN A+ DI ++ T ++N ++S +S+ TA+LRF L + +L P HF+++SY P+ + + S ++ +P ++MA+ + GKY++ C ++GDV ++N A+ +R +FV W Sbjct: 100 NSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKENPDV---VVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQ-ISSRTSAIDVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPW 341
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.218e-21 Identity = 63/209 (30.14%), Postives = 110/209 (52.63%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR 628 NN++ G Y G+E+ + +D I + A+N L G L ++V + KK ++V+ + ST VV PYN VLS L+E+ D V+LDN A++ + + PT+ ++N LV++++S+ TA RF+ A+ + +L P+P +HF+ S+ +PV+ + + + SVA++T +P+SMM R Sbjct: 104 NNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIR--YLDLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASR 309
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 65/254 (25.59%), Postives = 125/254 (49.21%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA-YHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCL-MYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757 NN+ G Y +GK + + +D I++ A+ C L+ FL+ +++ ++ KK ++++P+ S+ VV +PYNSVL+ H L+E++D V++DN ++ SL I PT+ ++N L+S V+++ T+++RF G + LVP + F++ SY P + E + + + +++ P + +A + + + L + G +V+ V K + FV W P F Sbjct: 95 NNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYEQTKAQSVVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSF 347
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20 Identity = 63/232 (27.16%), Postives = 114/232 (49.14%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH----EQLSVAEITNSAFEPSSMMAKCDPRHGK--YMACCLMYRGDVVPK 682 NN+ G Y++G+++ + D I + AD L+GF++ +++ + KK ++V+P+ Q VV+PYNS+LS L ++ D V+LDN A+ I L + P++ N+LVS V+S+ T +LR+ + D+ +L+P PR HF+++SY S E + +V ++ +P + M +P K YM+ + + P+ Sbjct: 37 NNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSY--TFSGENVEQAKTVRKTTVLDVMRRLLQPKNRMVSTNPTSHKSCYMSILNIIQAKPTPQ 265
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.820e-17 Identity = 62/249 (24.90%), Postives = 118/249 (47.39%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 742 N+++ G Y IG D L++I K D+ +GF + ++V Y KK ++V+P+ + S VV+ YN++L+ L+E +D V+ DN ++ +I + + N+L+S +ISS+T S+RF + ++ + L+P P +HF+ S+ P S + H+ S ++ +PS+ + + Y G+V P+ ++ A+ K ++ I+F W Sbjct: 103 NSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMT--KLQQRIKFPSW 347
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.986e-16 Identity = 50/174 (28.74%), Postives = 86/174 (49.43%), Query Frame = 2 Query: 5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 526 N++S G Y G + D +D I + D+ +GF + ++V Y K ++V+PS Q S VV PYN+VL+ L E D +++ DN A+ ++ R+ +Y + N+L+S +SS+T SLRF + + + L+P P +HF+ ++ P Sbjct: 104 NSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTP 275
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14 Identity = 63/257 (24.51%), Postives = 123/257 (47.86%), Query Frame = 2 Query: 2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDI----CRRSLDIERPT---YTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAY-HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 742 ANN+ G Y G E + L+ I + D C L F +F++V YG K L F+++PS + S VV+PYN++L+ L++++D + N+++ I + +I+ + N+L++ V +S++ LRF G + + +NL+P P + F+ SS AP + + Y +E + E++N ++ + + D + + + Y D +++ + +K+++ I FV W Sbjct: 128 ANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQKHNYLNEYDMLLELSNDRYKTNRVGG--DTSYISMLNYLIGYNLD--QREIRKGI--LKSQQRISFVPW 377
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11 Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGL 100 ANNF+RGHYT+G+EIVDLCLDR+RKLADNCTGL Sbjct: 81 ANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113 The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 421
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bpback to top |