CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.008e-24
Identity = 68/250 (27.20%), Postives = 127/250 (50.80%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCP 748
            NN+++G Y  G +  +  ++ I + AD    L+GF++ +++                   Y KK    ++V+P+   +  VV+PYN +LS   L+ + D  V+LDN AI  I    L +  PT + +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   ++      + +V ++     +  ++M     + G YM+   + +GDV P  V+ ++  I+ +    F+ W P
Sbjct:  102 NNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERNVANFIPWGP 348          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23
Identity = 75/253 (29.64%), Postives = 126/253 (49.80%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS----AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPT 751
            N +S G Y  G E  D  ++ I K  D     +GF + ++V                   Y KK    ++V+PS + S  VV+PYN++L+   L++++D +VL DN+A+ ++  R L     +Y   N+L++ V+SS+T SLRF   +   +    + LVP P +HF+  S+ P  S      K + ++LS  ++    F+ ++ M   D     Y+A     +G V   DV  A+  +KT++ I+F  W PT
Sbjct:  104 NTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDF-KRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAI--LKTQQRIKFAPWSPT 351          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.102e-22
Identity = 66/250 (26.40%), Postives = 119/250 (47.60%), Query Frame = 2
Query:    5 NNFSRGHYTIGK--EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVY--PSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 742
            N+++ G+YT  K  EI ++    I +  ++C  L+GF   +++                   Y K     F+V    +P V   VV PYNS+L+   L+      V+ DN A+ DI      ++  T  ++N ++S  +S+ TA+LRF   L   +     +L P    HF+++SY P+    +    + S  ++     +P ++MA+   + GKY++ C  ++GDV   ++N A+     +R  +FV W
Sbjct:  100 NSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKENPDV---VVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQ-ISSRTSAIDVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPW 341          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.218e-21
Identity = 63/209 (30.14%), Postives = 110/209 (52.63%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPR 628
            NN++ G Y  G+E+ +  +D I + A+N   L G L  ++V                   + KK    ++V+ +   ST VV  PYN VLS   L+E+ D  V+LDN A++ +       + PT+ ++N LV++++S+ TA  RF+ A+   +     +L P+P +HF+ S+ +PV+   + +  + SVA++T    +P+SMM     R
Sbjct:  104 NNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIR--YLDLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASR 309          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 65/254 (25.59%), Postives = 125/254 (49.21%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA-YHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCL-MYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 757
            NN+  G Y +GK + +  +D I++ A+ C  L+ FL+ +++                  ++ KK    ++++P+   S+ VV +PYNSVL+ H L+E++D  V++DN ++      SL I  PT+ ++N L+S V+++ T+++RF G +          LVP   + F++ SY P +  E +    + + +++      P + +A  +    + +   L +  G     +V+  V     K  + FV W P  F
Sbjct:   95 NNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYEQTKAQSVVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSF 347          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 63/232 (27.16%), Postives = 114/232 (49.14%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH----EQLSVAEITNSAFEPSSMMAKCDPRHGK--YMACCLMYRGDVVPK 682
            NN+  G Y++G+++ +   D I + AD    L+GF++ +++                   + KK    ++V+P+ Q    VV+PYNS+LS   L ++ D  V+LDN A+  I    L +  P++   N+LVS V+S+ T +LR+    + D+     +L+P PR HF+++SY    S E         + +V ++     +P + M   +P   K  YM+   + +    P+
Sbjct:   37 NNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSY--TFSGENVEQAKTVRKTTVLDVMRRLLQPKNRMVSTNPTSHKSCYMSILNIIQAKPTPQ 265          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.820e-17
Identity = 62/249 (24.90%), Postives = 118/249 (47.39%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS---AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 742
            N+++ G Y IG    D  L++I K  D+    +GF + ++V                   Y KK    ++V+P+ + S  VV+ YN++L+   L+E +D  V+ DN ++ +I  +          + N+L+S +ISS+T S+RF   +   ++   + L+P P +HF+  S+ P  S    +   H+  S  ++     +PS+ +      +  Y        G+V P+ ++ A+   K ++ I+F  W
Sbjct:  103 NSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMT--KLQQRIKFPSW 347          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.986e-16
Identity = 50/174 (28.74%), Postives = 86/174 (49.43%), Query Frame = 2
Query:    5 NNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 526
            N++S G Y  G +  D  +D I +  D+    +GF + ++V                   Y K     ++V+PS Q S  VV PYN+VL+   L E  D +++ DN A+ ++  R+      +Y + N+L+S  +SS+T SLRF   +   +    + L+P P +HF+  ++ P
Sbjct:  104 NSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTP 275          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 63/257 (24.51%), Postives = 123/257 (47.86%), Query Frame = 2
Query:    2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDI----CRRSLDIERPT---YTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAY-HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 742
            ANN+  G Y  G E  +  L+ I +  D C  L  F +F++V                   YG K  L  F+++PS +  S  VV+PYN++L+   L++++D   +  N+++  I       + +I+      +   N+L++ V +S++  LRF G +   +    +NL+P P + F+ SS AP  + +  Y +E   + E++N  ++ + +    D  +   +   + Y  D   +++   +  +K+++ I FV W
Sbjct:  128 ANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQKHNYLNEYDMLLELSNDRYKTNRVGG--DTSYISMLNYLIGYNLD--QREIRKGI--LKSQQRISFVPW 377          
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 ANNFSRGHYTIGKEIVDLCLDRIRKLADNCTGL 100
            ANNF+RGHYT+G+EIVDLCLDR+RKLADNCTGL
Sbjct:   81 ANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBG2_EUPCR2.008e-2427.20Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_ASHGO8.434e-2329.64Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG_ENTHI1.102e-2226.40Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_CAEEL1.218e-2130.14Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_ENCCU6.045e-2125.59Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_COCHE6.683e-2027.16Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBG_YEAST1.820e-1724.90Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_CANGA9.986e-1628.74Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_CANAL9.347e-1424.51Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBA_PICAB2.545e-1187.88Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
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