CF835932

Overview
NameCF835932
Unique NameCF835932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:70..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   41 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 520
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 54/170 (31.76%), Postives = 88/170 (51.76%), Query Frame = 2
Query:   11 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 517
            M+      + MRE +++K+V++++VGE G  L  A ++L++++GQT V + A      FG R  + I   VT+RG  A   LE  L +    +  R F +TG F FG++EH      +YDP  GIYG+D  V L                   +HR+T  DA+++ + ++
Sbjct:    1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 2
Query:   32 SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 403
            SN M+  K++K+V+N+ VGE+     ++  A   L +++GQ PV +KAR ++  F +R    + C VT+R D+  + L+  +     +VK++  L+  +F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    8 RMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 403
            +M  +    NPM    + K+V+N+ VGE+     ++T AA  L Q++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   21 KMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_RHIEC (50S ribosomal protein L5 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 2
Query:    8 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 403
            R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   19 RKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_RHIE6 (50S ribosomal protein L5 OS=Rhizobium etli (strain CIAT 652) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 2
Query:    8 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 403
            R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   19 RKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 42/142 (29.58%), Postives = 79/142 (55.63%), Query Frame = 2
Query:    8 RMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 403
            ++  E    NPM+   ++K+V+N+ VGE+     ++T AA  L +++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   21 KLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_AGRT5 (50S ribosomal protein L5 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 2
Query:    8 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 403
            R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV +KAR ++  F +R +  I   VT+RG++  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   18 RGAMQEKFSYANVMMIPKLDKIVINMGVGEATADSKKPTIAAGDLAAIAGQKPVITKARNSIAGFKVREHMPIGAKVTLRGERMYEFLDRLINIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 161          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_AGRRK (50S ribosomal protein L5 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 2
Query:    8 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 403
            R A ++K S  N M+  K+ K+V+N+ VGE+     + T AA  L  ++GQ PV + AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   19 RAALQEKFSYANEMQIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITHARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CF835932 vs. ExPASy Swiss-Prot
Match: RL5_RICPR (50S ribosomal protein L5 OS=Rickettsia prowazekii GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 2
Query:   53 KVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 406
            K++K+V+N+ VGE+      +  A   L  +SGQ PV + AR ++ +F +R N KI C VT+R D+    LE  +     +VKE+     ++F   G F FG++E I    I YD    I GMD  +V
Sbjct:   30 KIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPVVTLARKSIATFKLRENMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDTIRGMDITIV 157          
The following BLAST results are available for this feature:
BLAST of CF835932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL5_HALS36.296e-2034.7850S ribosomal protein L5P OS=Halobacterium salinar... [more]
RL5_HALWD3.124e-1931.7650S ribosomal protein L5P OS=Haloquadratum walsbyi... [more]
RL5_PHEZH1.406e-1132.8450S ribosomal protein L5 OS=Phenylobacterium zucin... [more]
RL5_XANP21.836e-1130.2850S ribosomal protein L5 OS=Xanthobacter autotroph... [more]
RL5_RHIEC3.132e-1134.0350S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_RHIE63.132e-1134.0350S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_AZOC53.132e-1129.5850S ribosomal protein L5 OS=Azorhizobium caulinoda... [more]
RL5_AGRT54.090e-1134.0350S ribosomal protein L5 OS=Agrobacterium tumefaci... [more]
RL5_AGRRK5.342e-1134.0350S ribosomal protein L5 OS=Agrobacterium radiobac... [more]
RL5_RICPR6.977e-1135.9450S ribosomal protein L5 OS=Rickettsia prowazekii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835932 ID=CF835932; Name=CF835932; organism=Citrus sinensis; type=EST; length=735bp
GCAAACCCGAATGGCTTCAGAGAAGAAACTTTCGAACCCCATGAGGGAAA
TTAAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGAT
CGTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACC
TGTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTA
ATGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAG
CTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGGAA
TTTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATC
TTGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATTTCTTT
GTGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGACGCCGTAGGTGCAA
GTCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAATGAAAT
GGTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGAATATT
GGTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGTTGATG
TTTGTAGACACTGGCTATTACTTGGCGTTTTGCAAACCTGAGTTAGATGC
TTTTGGTAGTTCAAGATATTTTGTTATTTGTCTATTTAAATTTTATTATC
AAGATTATGGCTTAGCTGCAAAAAAAAAAAAAAAA
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