CF835933

Overview
NameCF835933
Unique NameCF835933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAEP (Catalase OS=Staphylococcus epidermidis GN=katA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 59/181 (32.60%), Postives = 93/181 (51.38%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  +VPG+ YS DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M F+  ++     Y+P+    Y+     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    V+ +V    + + ++AD   G+ +A  L++
Sbjct:  311 EQAAFAPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSR---DGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDG-DGYEYNYRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--DGVSKDVKVRHIRHCYKADPEYGKGVAKALDI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_DESVM (Catalase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=katA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 56/173 (32.37%), Postives = 84/173 (48.55%), Query Frame = -3
Query:  219 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNF-MHRDEEVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKE--NNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNVR 728
            E  AFNP  VVPGI +S DKMLQ R+F+YGD  R+RLG N+ ++PV A +CP  + H DG M    +    + Y P+ Y        +  P   I G        ++  + + QPG  +R   P +Q+       +A+ D     E+    V    +AD + G  +A  L ++
Sbjct:  309 EQAAFNPANVVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHLIPVNAARCPVHSYHRDGAMRVDGNHGSTLAYEPNSYGEWQEQPDFAEPPLAIRGDAAHWNFREDDADYYDQPGRLFRLMTPQQQDELFQNTARAMGD--APEEIKRRHVGNCAKADPAYGAGVARALGLK 479          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_VIBVY (Catalase OS=Vibrio vulnificus (strain YJ016) GN=VVA0294 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 58/174 (33.33%), Postives = 90/174 (51.72%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMN----FMHRDE-EVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PGI  S D++LQ R+FAY DTQ +RLG N   LPV +PK P  N++ DG  N      + D  +V+Y PSR       ++       ++G  ++  I    +F Q G  YRS +   +   ++  +    +     EV +I VSY+++AD+  G +LA   +V
Sbjct:  325 EQSAFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETPLSGHVQQQAIRNPRDFFQAGVLYRSLSEQDKADLIHN-LSGDLNKVNDAEVKAIMVSYFYRADKEYGTRLAKATDV 497          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_VIBVU (Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 58/174 (33.33%), Postives = 90/174 (51.72%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMN----FMHRDE-EVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PGI  S D++LQ R+FAY DTQ +RLG N   LPV +PK P  N++ DG  N      + D  +V+Y PSR       ++       ++G  ++  I    +F Q G  YRS +   +   ++  +    +     EV +I VSY+++AD+  G +LA   +V
Sbjct:  325 EQSAFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETPLSGHVQQQAIRNPRDFFQAGVLYRSLSEQDKADLIHN-LSGDLNKVNDAEVKAIMVSYFYRADKEYGTRLAKATDV 497          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_HELPY (Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 57/156 (36.54%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  300 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKE-------------NNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHE 728
            E  AF+P  VVPGI YS D+MLQ R+F+YGDT R+RLG NY  +PV  P+CP  ++  DG+M   +     +Y PS          Y         +   A IEKE             + + QPG+ YRS   D +ER  +   ++L    VTH+
Sbjct:  311 EQAAFSPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPS------SLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLA--HVTHK 458          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_VIBPA (Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 55/174 (31.61%), Postives = 86/174 (49.43%), Query Frame = -3
Query:  213 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMH-RDEEVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSW-APDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNVRPS 728
            E  AF P  ++PGI  S D++LQ R+FAY DTQ +RLG N   LPV  P     N++ +G  N     + +V+Y PSR        ++      + G  ++  I K  +F Q G  YRS    DR +   N  +    +  +  ++ +  VSY+++AD+  G +LA   +   S
Sbjct:  325 EQSAFAPSNLIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNRPLTSVNNHNQNGLSNNAQLSNGDVNYEPSRKLNLAEDNQFKAVETKLVGTVQQKAISKPRDFYQAGVLYRSMNEQDRSDLIAN--LAGDLNKVIDKDIKATMVSYFYRADKEYGSRLAEATDTNLS 496          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAWA (Catalase OS=Staphylococcus warneri GN=katA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  +VPG+ YS DKMLQ R+F YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+    YD     ++ P P+D   G       + +N F+QPG+ +R  + + +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIVPGLDYSPDKMLQGRLFPYGDAQRYRLGVNHWQIPVNQPKGVGIENLCPFSR---DGQMRILDDNQGGGPHYYPNNQGVYDSQPEFKKPPFPADG-DGYEYNQRQDDDNYFEQPGKLFRLQSDEAKERIFTNTANAM--DGVTEDVKRRHIRHCYKADPDYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAW (Catalase OS=Staphylococcus aureus (strain MW2) GN=katA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAS (Catalase OS=Staphylococcus aureus (strain MSSA476) GN=katA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAR (Catalase OS=Staphylococcus aureus (strain MRSA252) GN=katA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
The following BLAST results are available for this feature:
BLAST of CF835933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
CATA_STAEP1.429e-1632.60Catalase OS=Staphylococcus epidermidis GN=katA PE=... [more]
CATA_DESVM1.429e-1632.37Catalase OS=Desulfovibrio vulgaris (strain Miyazak... [more]
CATA_VIBVY2.438e-1633.33Catalase OS=Vibrio vulnificus (strain YJ016) GN=VV... [more]
CATA_VIBVU2.438e-1633.33Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=... [more]
CATA_HELPY2.438e-1636.54Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2[more]
CATA_VIBPA4.158e-1631.61Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=... [more]
CATA_STAWA4.158e-1632.60Catalase OS=Staphylococcus warneri GN=katA PE=3 SV... [more]
CATA_STAAW4.158e-1631.49Catalase OS=Staphylococcus aureus (strain MW2) GN=... [more]
CATA_STAAS4.158e-1631.49Catalase OS=Staphylococcus aureus (strain MSSA476)... [more]
CATA_STAAR4.158e-1631.49Catalase OS=Staphylococcus aureus (strain MRSA252)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835933 ID=CF835933; Name=CF835933; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTTTCTAAAACAGACTTTTATTAATTGACCCTCAGGA
AAAGAGTCACATAACATGCAAGTTTATTTTCTCTATTACAATATACAACA
GCAAACATAGGATCGAAATTCTTCACATAGCTGCACCCTTGGGGTTCACT
CCTTGCTCACTCTTGGCAAGTCAAAAGCATCCAGTGTTCCAGTTCAAGTG
ACACCTTCAAATGCTTGGCCTCACATTGAGACAAGAAGCTAGCTTCTGAC
CCAAAGATCTGTCGGCCTGAAACCAGTAAGAGACCCATATGCTGCCAACC
TCATGGGTGACACGTGGGTCACATAAAGCCTTAATCCATCGATTAAGGAA
CCTCTCTTGCCTGTCTGGGGCCCAGGATCGGTATCTCTCTCCAGGCTGCT
TGAAGTTGTTTTCCTTCTCAATGCAAGCCTTCTCACGCCTTCCTGTAATT
ACATCAGAAGGAATGGGATATCTCTCAGCATGACAAGTAGGATCATACCT
CGAAGGAAAGTAATCGACCTCCTCATCCCTGTGCATGAAATTCATGAAAC
CATCATAATGATTGTTGCGATGAGGACATTTGGGTGCATAAACTGGAAGC
ATCAAGTAGTTGGGTCCAAGGCGATGCCTCTGGGTATCACCATAGGCAAA
GATTCGACATTGGAGCATCTTATCATTTGAGTAGTAGATCCCAGGAACCA
CGATACCAGGGTTAAATGCAAGCATTTCAT
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