CF835933

Overview
NameCF835933
Unique NameCF835933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8246 contig Csv1_Contig8246:359..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAN (Catalase OS=Staphylococcus aureus (strain N315) GN=katA PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAM (Catalase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=katA PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAC (Catalase OS=Staphylococcus aureus (strain COL) GN=katA PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAB (Catalase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=katA PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAA8 (Catalase OS=Staphylococcus aureus (strain NCTC 8325) GN=katA PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAA3 (Catalase OS=Staphylococcus aureus (strain USA300) GN=katA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_HELPJ (Catalase OS=Helicobacter pylori J99 GN=katA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 53/139 (38.13%), Postives = 69/139 (49.64%), Query Frame = -3
Query:  351 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKE-------------NNFKQPGERYRSWAPDRQER 728
            E  AF P  VVPGI YS D+MLQ R+F+YGDT R+RLG NY  +PV  P+CP  ++  DG+M   +     +Y PS          Y         +   A IEKE             + + QPG+ YRS   D +ER
Sbjct:  311 EQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSSSRDGYMQNGYYGSLQNYTPS------SLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKER 443          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_DICDI (Catalase-A OS=Dictyostelium discoideum GN=catA PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPV---YAPKCPHRNNHYDGFMNFM-HRDEEVDYFPSRY-DPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF+P  +VPGI  S DKMLQ R+F+Y DT RHRLG NY  +PV   +A K   +N   DGFM    +  +  +Y P+ +  P  H E      DV      +      ++F QPG+ YR  + D + RF++  +  +    +  E+    VS +++AD+ LG +L   L +
Sbjct:  310 EQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTI-KEIQVRAVSNFYKADKDLGARLCKGLGI 482          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_VIBCH (Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = -3
Query:  225 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSW-APDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLN 728
            E  AF P  ++PGI  S D++LQ R+FAY DTQ +RLG N   LP+  P     +++ +G  N      +++Y PSR        ++      + G  ++  I    NF Q G  YRS    D+Q+   N  +    +     E+ +  VS++++AD+  G +LA   N
Sbjct:  325 EQSAFAPSNLIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPINRPLVEVNSHNQEGASNSAQTASDINYQPSRKLELKEDPQFKAVQTQLVGSVQQKAISNPRNFYQAGVLYRSLNEQDKQDLITN--LXGBLNKVTDKEIKATMVSHFYRADKDYGTRLARATN 491          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAAU (Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M  +  ++     ++P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHHYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
The following BLAST results are available for this feature:
BLAST of CF835933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
CATA_STAAN4.158e-1631.49Catalase OS=Staphylococcus aureus (strain N315) GN... [more]
CATA_STAAM4.158e-1631.49Catalase OS=Staphylococcus aureus (strain Mu50 / A... [more]
CATA_STAAC4.158e-1631.49Catalase OS=Staphylococcus aureus (strain COL) GN=... [more]
CATA_STAAB4.158e-1631.49Catalase OS=Staphylococcus aureus (strain bovine R... [more]
CATA_STAA84.158e-1631.49Catalase OS=Staphylococcus aureus (strain NCTC 832... [more]
CATA_STAA34.158e-1631.49Catalase OS=Staphylococcus aureus (strain USA300) ... [more]
CATA_HELPJ4.158e-1638.13Catalase OS=Helicobacter pylori J99 GN=katA PE=3 S... [more]
CATA_DICDI4.158e-1634.48Catalase-A OS=Dictyostelium discoideum GN=catA PE=... [more]
CATA_VIBCH5.430e-1630.77Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2[more]
CATA_STAAU1.580e-1530.94Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835933 ID=CF835933; Name=CF835933; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTTTCTAAAACAGACTTTTATTAATTGACCCTCAGGA
AAAGAGTCACATAACATGCAAGTTTATTTTCTCTATTACAATATACAACA
GCAAACATAGGATCGAAATTCTTCACATAGCTGCACCCTTGGGGTTCACT
CCTTGCTCACTCTTGGCAAGTCAAAAGCATCCAGTGTTCCAGTTCAAGTG
ACACCTTCAAATGCTTGGCCTCACATTGAGACAAGAAGCTAGCTTCTGAC
CCAAAGATCTGTCGGCCTGAAACCAGTAAGAGACCCATATGCTGCCAACC
TCATGGGTGACACGTGGGTCACATAAAGCCTTAATCCATCGATTAAGGAA
CCTCTCTTGCCTGTCTGGGGCCCAGGATCGGTATCTCTCTCCAGGCTGCT
TGAAGTTGTTTTCCTTCTCAATGCAAGCCTTCTCACGCCTTCCTGTAATT
ACATCAGAAGGAATGGGATATCTCTCAGCATGACAAGTAGGATCATACCT
CGAAGGAAAGTAATCGACCTCCTCATCCCTGTGCATGAAATTCATGAAAC
CATCATAATGATTGTTGCGATGAGGACATTTGGGTGCATAAACTGGAAGC
ATCAAGTAGTTGGGTCCAAGGCGATGCCTCTGGGTATCACCATAGGCAAA
GATTCGACATTGGAGCATCTTATCATTTGAGTAGTAGATCCCAGGAACCA
CGATACCAGGGTTAAATGCAAGCATTTCAT
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