CF835935

Overview
NameCF835935
Unique NameCF835935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METC4 (Anthranilate phosphoribosyltransferase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 71/191 (37.17%), Postives = 99/191 (51.83%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAG+ FM +  +H AM+ V PVR +L  +T+FN+LGP+ NPA V   V GV        +   L   G +R   VH S+GLDE++  GP  ++ +       F+ DP +  +P  TL+ L+GG P +NA  L  VL G R               +V+    +LAEGVA A+E   SG A  TL   + VS
Sbjct:  145 EAGLCFMFAQTHHGAMRHVAPVRTELPFRTIFNMLGPLSNPAGVTAQVFGVSRPAWAEPLTRVLATLGSRRVWTVHGSDGLDEITTTGPTAVVALEDGAFRHFTLDPREVSLPLATLDDLRGGDPEHNAAALGAVLEGARNAYRDIAVLNAGAGLVVAGAAGSLAEGVARAQEAIDSGAARGTLARLVAVS 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_LACCB (Anthranilate phosphoribosyltransferase OS=Lactobacillus casei (strain BL23) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 62/185 (33.51%), Postives = 104/185 (56.22%), Query Frame = -2
Query:  233 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLD 784
            E  + F+ + +YH +MK+V PVRK+L  +T+FNILGP+ NPA     ++GVY+E L+  +AN L++ G+  A+VVH  +GLDEM+      ++++  + + +++  P  +G+ R     L GG P  NA + RR+L+G+ G               V+    ++  G+ LA +    GKA   L+
Sbjct:  143 ENNLAFLFAQEYHKSMKYVAPVRKQLGFRTIFNILGPLANPAHPTHQLLGVYDETLLEPLANVLKKLGVTNAMVVHGRDGLDEMTTADETAVVELQDDHLTKYTVTPEQFGLKRRQRADLVGGTPEANANITRRILAGDHGPQRDIVLLNAGAALHVAHPDLSIQAGIDLAAKTIDDGKAFEELN 327          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_GEOBB (Anthranilate phosphoribosyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 63/185 (34.05%), Postives = 102/185 (55.14%), Query Frame = -2
Query:  233 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLD 784
            + GIGF+ +   H AMK     R+++ ++T+FNILGP+ NPA     V+GVY E+LV K+A  L++ G +   VVH  +G+DE++  G   + ++T + ++ +   P  +G+ R  L  L GG    NA ++R +LSG+ G              + + K   +AEG+ LA E   SG A+  L+
Sbjct:  158 QIGIGFLFAPALHGAMKHAIGPRREIGIRTIFNILGPLTNPAGADCQVLGVYREDLVEKLAQVLKKLGCRSGFVVHGCDGMDEITLTGESTVAEITADGVKLYKVTPEQFGLERAPLAELHGGDALGNAVIVRDILSGKDGAKRRIVLLNAGYALVATGKAKDVAEGIRLAAETIDSGAAMKQLE 342          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_EXIS2 (Anthranilate phosphoribosyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 64/182 (35.16%), Postives = 103/182 (56.59%), Query Frame = -2
Query:  236 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTL 778
            GI F+ + + HP +K +  VR+ L++ T+FN++GP+ NP  +   ++G+Y E+L+  +A  L R G KRA+V+H   G+DE S  G   ++ + Q ++ RFS  P + G+    +E+++GG  A NAE+L RVL GE G                  +V T+ EG+  + E   SG+AL  L
Sbjct:  145 GIAFLFAQRMHPRVKQIMKVRRDLRIPTIFNLIGPLTNPVPLKTQLLGIYREDLLETIALTLHRLGRKRAIVLHGACGMDEASLAGTNQLVLLDQGELIRFSLHPEEVGLSVAPIEAIRGGTAAENAEILLRVLRGEAGPYRDTVLLNAGIALFAEGRVETIREGIERSAESIDSGRALEKL 326          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_BACC1 (Anthranilate phosphoribosyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 68/193 (35.23%), Postives = 102/193 (52.85%), Query Frame = -2
Query:  203 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHLL 778
            GI F+ +   HPA++ +  +RK+L V T+FN++GP+ NP  +    VG+Y  +++L +A  LQ+ G K++LVV+  G LDE S  G   ++ +   +I   S DP  YG  R   E ++GG    NA++   VLSGE+                 + K  T+ EG+ LA     SGKAL  L+L I  S   L
Sbjct:  145 GIAFLFAPAMHPALRRIMKIRKELNVPTIFNLIGPLTNPVNLETQFVGIYKRDMLLPVAQVLQKLGRKQSLVVNGSGFLDEASLQGENHVVLLKDNEIVEMSIDPEKYGFSRVKNEEIRGGNSKENAKITLGVLSGEKSVYRDTVLFNAGLALFANGKTETIEEGIKLAAYSIDSGKALAKLNLLIAASNEKL 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_SORC5 (Anthranilate phosphoribosyltransferase OS=Sorangium cellulosum (strain So ce56) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 68/193 (35.23%), Postives = 102/193 (52.85%), Query Frame = -2
Query:  212 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG--XXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 784
            E G  F+ + +YH  ++   PVR+ LKV+T+ N+LGP++NP+  P  V+G+Y+  LV   A  L   G + ALVVH  GLDE++   P     +    +E    DP D G+    +E+L+G GPA NA  LR +L+G RG                 ++ +   L EG ALA E   SG+A   L  ++ +S+
Sbjct:  144 EVGFCFLFAPQYHAGLRHAMPVRRALKVRTIMNLLGPLVNPSAPPIQVMGIYDPELVTHAARTLGMLGCQAALVVHGGGLDEVALHAPTRAARLRDGVVEELLIDPADAGVAPAPIEALRGAGPAANAAWLRDLLAG-RGAPAHRDAVAINAGALLWIAGRAEGLREGTALALEALGSGRAAERLTRFVALSR 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSM (Anthranilate phosphoribosyltransferase OS=Geobacter sp. (strain M21) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 64/185 (34.59%), Postives = 102/185 (55.14%), Query Frame = -2
Query:  233 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLD 784
            + GIGF+ +   H AMK     R+++ ++T+FNILGP+ NPA     V+GVY E+LV K+A  L++ G +   VVH S+G+DE++  G   + ++T + ++     P  +G+ R  L  L GG    NA ++R +LSG+ G              + + K   +AEG+ LA E   SG A+  L+
Sbjct:  158 QIGIGFLFAPALHGAMKHAIGPRREIGIRTIFNILGPLTNPAGADCQVLGVYREDLVEKLAQVLKKLGCRSGFVVHGSDGMDEITLTGESTVAEITADGVKLSKVTPEQFGLERAPLTELHGGDAQGNAVIVRDILSGKDGAKRRIVLLNAGYALVATGKAKDVAEGIRLAAETIDSGAAMKQLE 342          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_XYLFM (Anthranilate phosphoribosyltransferase OS=Xylella fastidiosa (strain M12) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 64/190 (33.68%), Postives = 107/190 (56.32%), Query Frame = -2
Query:  212 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV-HSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 778
            G+GFM +  +HP M+ V PVR+++ V+T+FNILGP+ NPA  P  ++GV++ +LV   A+ L + G +RALVV   +G+DE+S     L+ ++   ++  +   P DYG+    + +LQ   PA + E+L  VL+G+ G               V+     +  GV LA E+   G+A + LD ++  ++
Sbjct:  150 GVGFMFAPIHHPVMQVVSPVRREMGVRTIFNILGPLTNPADAPNILMGVFDPDLVCIQAHVLHKLGAERALVVCGRDGMDELSLGTTTLVGELRGGRVREYEVSPEDYGMAVSPISNLQVESPAESREMLLNVLAGKPGPALDVVALNAGAALYVAGVAQDIGHGVVLASEVLFDGRARDILDQYVAFTR 339          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_SOLUE (Anthranilate phosphoribosyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 65/170 (38.24%), Postives = 93/170 (54.71%), Query Frame = -2
Query:  278 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVAL 784
            E GIGF+ +   H AMK   PVR  LK++TVFN+LGP+ NPA     ++G  + +    MA A+   GL+R  VVH S+GLDE++  GP L  +V   K+ER + +P D+ +     E L+GG  A N E+   VL+G  G              + + K +T  EG+AL
Sbjct:  147 EVGIGFLFAPAVHTAMKHAHPVRVDLKLRTVFNLLGPLTNPAGATAQLIGAPSSHAAELMAGAIAALGLERGFVVHGSDGLDEITTTGPTLAFEVRNGKVERRTLEPADFAVAIAAPEDLKGGDLARNLEIADSVLAGAAGPHRDIVLVNAAAALVAAGKADTFLEGMAL 316          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHIEC (Anthranilate phosphoribosyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 65/193 (33.68%), Postives = 100/193 (51.81%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            EA +GFM +  +H AM+ V P R +L  +T+FN+LGP+ NPA V   ++GV++   ++ +A  ++  G +   VVH +GLDE++  G   +  +   KI  F   P D+G+  C L  ++GG    NA  LR VL G +               ++S KV T+ +G+ LA     SG     LD  I VS  +
Sbjct:  145 EASVGFMFAQLHHSAMRHVGPSRVELGTRTIFNLLGPLSNPAGVRRQLLGVFSPQWLVPLAEVMRDLGSECVWVVHGDGLDEITTTGITKVAALEDGKIRSFELSPADFGVSPCVLADIKGGDGVANAAALREVLGGAKNAYRDVSLANAAASLVISGKVETIRDGMKLAAHSLDSGATALALDKLIAVSNDI 337          
The following BLAST results are available for this feature:
BLAST of CF835935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_METC45.034e-2637.17Anthranilate phosphoribosyltransferase OS=Methylob... [more]
TRPD_LACCB5.034e-2633.51Anthranilate phosphoribosyltransferase OS=Lactobac... [more]
TRPD_GEOBB5.034e-2634.05Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_EXIS25.034e-2635.16Anthranilate phosphoribosyltransferase OS=Exiguoba... [more]
TRPD_BACC15.034e-2635.23Anthranilate phosphoribosyltransferase OS=Bacillus... [more]
TRPD_SORC56.575e-2635.23Anthranilate phosphoribosyltransferase OS=Sorangiu... [more]
TRPD_GEOSM6.575e-2634.59Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_XYLFM8.587e-2633.68Anthranilate phosphoribosyltransferase OS=Xylella ... [more]
TRPD_SOLUE8.587e-2638.24Anthranilate phosphoribosyltransferase OS=Solibact... [more]
TRPD_RHIEC8.587e-2633.68Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835935 ID=CF835935; Name=CF835935; organism=Citrus sinensis; type=EST; length=785bp
GTATTCAACATAACATAATACATTCCTTAAGCCAATACTTTTGATATACT
ACAATAAACAATATTAATTTTAGGGACCTTCTAATTTCTTCTAATAGTTG
ATCGACAAGACGTGCATAAGCAAGCCAACTTTTGACCTACCTGTTATTCA
TGGTACTGCAATGAAGTCTTTCTTAGGCTTCAAAACTCCATTACTCATGC
ACAAGCAAATGCTTTGAGACTTCTATCCATAAATCCAGTGTATTAAGAGC
TTTCCCTGATAATTGAATTTCACGTGCCAGGGCTACACCCTCAGCCAAGG
TGTTCACTTTGCAACTGACCAACAGCGCTGCTGCAGCATTTAGGATTAAT
GCATCAGCTATTGCCCCTCTTTCTCCAGACAGTACACGCCTTAAGACCTC
TGCATTATATGCTGGGCCTCCACCTTGCAAGCTTTCTAAAGTGCAGCGCG
GAATGCCGTAGTCCAATGGATCAAATGAGAATCTCTCAATTTTTTCTTGG
GTGACATCAAGGATCAGACCAGGTCCAAGGGGACTCATCTCATCCAAACC
CTCTGAGTGAACAACCAATGCTCTTTTCAGGCCAAATCGTTGCAATGCAT
TGGCCATTTTGAGTACCAAGTTTTCATTGTAAACACCAACCACAGCGAAT
GGCACACATGCAGGATTCAACATAGGACCCAATATATTGAATACAGTTTT
TACTTTGAGCTTTTTCCTCACTGGCCTGACAAACTTCATTGCAGGGTGAT
ACTTTGTCGACATCATGAAACCAATTCCTGCCTCA
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