CF835935

Overview
NameCF835935
Unique NameCF835935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11761 contig Csv1_Contig11761:628..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_THET8 (Anthranilate phosphoribosyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpD PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.672e-29
Identity = 77/188 (40.96%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  224 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 784
            E G GF+ +  +HPAM+ V PVR +L V+TVFN+LGP+ NPA     V+GV++   +  MA AL+R G  R LVVH EG DE+  LG   +++V +     ++  P + G+ R  LE+L+GGGP  NA + RR+L G E+G                + K  +L EGVALARE+  SG+A   L+ ++
Sbjct:  142 ELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHGEGADEL-VLGENRVVEVGK---GAYALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVLASGEAYLLLERYV 324          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_THET2 (Anthranilate phosphoribosyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.672e-29
Identity = 77/188 (40.96%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  224 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 784
            E G GF+ +  +HPAM+ V PVR +L V+TVFN+LGP+ NPA     V+GV++   +  MA AL+R G  R LVVH EG DE+  LG   +++V +     ++  P + G+ R  LE+L+GGGP  NA + RR+L G E+G                + K  +L EGVALARE+  SG+A   L+ ++
Sbjct:  142 ELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHGEGADEL-VLGENRVVEVGK---GAYALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVLASGEAYLLLERYV 324          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CLOPH (Anthranilate phosphoribosyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.672e-29
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            E G+ FM +  YH AMKFV PVR++L ++T+FNILGP+ NPA     ++GVY E LV  +A  L + G+KR +VV+  +GLDE+S     +   +   K+  +  +P   G+ +C  E L GG PA NA + R +L+GE+G               +     TL E   +A +I  S KA++ LD +IE+S
Sbjct:  143 EMGLCFMFAQTYHSAMKFVAPVRRELGIRTIFNILGPLANPAGANLELLGVYEEALVKPLARVLLKLGVKRGMVVYGRDGLDEISLSHQTVCCKIRDGKLYDYILEPEQIGLTKCKKEDLVGGSPAENAAITRAILNGEKGPKRDAVIFNAAACIYMVRDDITLQEAAKIATDIIDSKKAIHQLDKFIELS 333          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_DESHD (Anthranilate phosphoribosyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.184e-29
Identity = 72/183 (39.34%), Postives = 109/183 (59.56%), Query Frame = -2
Query:  233 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALV-VHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLD 778
            G+ F+ +  YHPAM  V   R++L ++T+FN+LGP+LNPA  P+ ++GV + +L+ KMA ALQ  G KRA+V V  +GLDE++  G    + +    I+ F   P +YG+  C+L+ LQGG PA N ++  R+L G++G                + K   + EG+ALA E   SGKAL+ L+
Sbjct:  148 GMTFLFAQVYHPAMAKVARERRELGIRTIFNLLGPLLNPAGAPYQLLGVSSPSLLPKMAKALQILGSKRAVVAVGEDGLDEVTLTGATQAILIDGGAIQPFIIRPEEYGLNLCSLQDLQGGTPAENGQITLRILQGKKGPQRDIVLLNAGTALYAANKAAGIREGIALAAESLDSGKALSILE 330          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHISN (Anthranilate phosphoribosyltransferase OS=Rhizobium sp. (strain NGR234) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 72/190 (37.89%), Postives = 105/190 (55.26%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAG+GFM + ++H AM+ V P R +L  +T+FN+LGP+ NPA V   +VGV+    V  +A  L+  G +   VVH EGLDE++  G   + ++   KI  F   P  +G+ R TL++L+GG  A+NA  L+ VL GE                +++ +   LAEG+A+ RE   SG A   L   I VS
Sbjct:  145 EAGVGFMFAQQHHSAMRHVGPTRVELGTRTIFNLLGPLSNPAGVKRQLVGVFAPQWVDPLAEVLRDLGSESIWVVHGEGLDEITTTGVTKVAELKDGKIRSFELTPESFGLARTTLDALKGGDGAHNAAALQAVLDGEENAYRDISLANAAASLMIAGRATDLAEGMAIGREALSSGAAKAALQRLITVS 334          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CLOCE (Anthranilate phosphoribosyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=trpD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 73/189 (38.62%), Postives = 105/189 (55.56%), Query Frame = -2
Query:  215 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 778
            G+ FM +  YH +MK+  PVRK+L V+T+FNILGP+ NPA     ++GVY+ENLV  +A  L   G+KRA+VVH  +GLDE++      I +V+   I  F   P   G  RC L+ L GG P  NA +   +L+G +G               +S    TL + V +A ++  SG A   L+ +IE+S
Sbjct:  145 GMCFMFAPTYHASMKYAAPVRKELSVRTIFNILGPLANPAGANMQLLGVYDENLVEPLARVLLNLGVKRAMVVHGHDGLDEVTLCNTTTICEVSNGNINSFFLSPEQLGFSRCLLKELVGGDPKKNASIALDILNGSKGPKRDIVVLNSALCLYMSYNQITLRDCVKMAEQLIDSGAAKAQLNKFIELS 333          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_GEOUR (Anthranilate phosphoribosyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=trpD PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.725e-29
Identity = 73/191 (38.22%), Postives = 110/191 (57.59%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            E GIGF+ +   H AMK+    RK++ ++T+FNILGP+ NPA     V+GVY E+LV K+A+ L+  G KR  VVH  +G+DEM+      I +VT   +    F P + G+ RC ++ L+GG  A NA ++RRVL GE+G              + + +V   A G+ +A E   SGKAL  L+  ++++
Sbjct:  158 EIGIGFLFAPALHGAMKYAIGPRKEIGIRTIFNILGPLTNPAGAGCQVLGVYREDLVEKLAHVLKNLGCKRGFVVHGQDGMDEMTLTAETRIAEVTPAGVATRLFRPEELGLSRCGMDDLRGGDAAANAVIVRRVLEGEKGPKRDIVLLNAAFGLVAAGRVVDPAAGLTMAAEAIDSGKALAQLEKLVKLT 348          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METLZ (Anthranilate phosphoribosyltransferase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=trpD PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.865e-29
Identity = 67/190 (35.26%), Postives = 105/190 (55.26%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            E GIGFM +  +HPAMK+   VRK++ +++ FN++GP+ NPA     ++GVY+  L  K+A  L   G KRA+VVH +G DE++  G   + +V   ++  +S DP  +G  +    SL GG   YNA ++R VLSG+ G               +  +  ++A+G+  A +   SG AL  L+  I +S
Sbjct:  145 ENGIGFMFAQSHHPAMKYAGKVRKEIGIRSFFNLIGPLSNPAGADAQLLGVYDSPLTEKIAEVLNILGTKRAMVVHGDGYDEITTTGITQVSEVNDGQVRSYSLDPSSFGFQKADAASLFGGDSQYNAHIIRSVLSGDEGPRRDIVILNAAAAIYLGERAGSIADGIKYAEKSIDSGLALEKLENLILLS 334          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_COLP3 (Anthranilate phosphoribosyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=trpD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.353e-29
Identity = 67/191 (35.08%), Postives = 109/191 (57.07%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            +  + F+ +  YH   K+  PVRK + ++T+FNILGP++NPA     ++GVY   L++ MA ALQ  G+KRA VVH  GLDE++  G    +++   ++   +  P D+G+   TLE ++GG PA NA+++R +LSG+ +                +  K  +L +   LA E+  SGK L+TL   +++S
Sbjct:  160 QTNLCFLYAPAYHSGFKYAGPVRKAMGIRTLFNILGPLVNPAKPNIMLLGVYTPELLMPMAQALQLTGVKRAFVVHGSGLDEIALHGNTQAIEINNGELIERTISPQDFGLKNYTLEEIKGGTPAENADIIRDILSGQGKDAHNAAVIVNCAALLYLHDKAESLTQAAQLATEVLASGKGLSTLLTLVKLS 350          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_NATPD (Anthranilate phosphoribosyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=trpD PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.298e-29
Identity = 71/180 (39.44%), Postives = 104/180 (57.78%), Query Frame = -2
Query:  248 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKA 784
            E G+GFM++  +HPAMK V   RK+L ++T+FN+LGP+ NPA     VVGVY+E LV  +A+AL R  + RALVVH  GLDE+   G   + +V  E +E+++  P D G+    L ++ GG P  NA  +R +L G+  G               ++ + ++LA GV  ARE   +G A
Sbjct:  142 ETGMGFMLAPVFHPAMKAVIGPRKELGMRTIFNVLGPLTNPADADAQVVGVYDEALVPTLADALSRMSVDRALVVHGAGLDEIGVHGESTVAEVDGESVEQYTVTPSDLGVDSHDLSAVAGGSPTENAADMRGILEGDVEGAKRDIILANAGAAIYIAGEADSLAAGVDAARESIDTGAA 321          
The following BLAST results are available for this feature:
BLAST of CF835935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_THET81.672e-2940.96Anthranilate phosphoribosyltransferase OS=Thermus ... [more]
TRPD_THET21.672e-2940.96Anthranilate phosphoribosyltransferase OS=Thermus ... [more]
TRPD_CLOPH1.672e-2938.22Anthranilate phosphoribosyltransferase OS=Clostrid... [more]
TRPD_DESHD2.184e-2939.34Anthranilate phosphoribosyltransferase OS=Desulfit... [more]
TRPD_RHISN2.852e-2937.89Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_CLOCE2.852e-2938.62Anthranilate phosphoribosyltransferase OS=Clostrid... [more]
TRPD_GEOUR3.725e-2938.22Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_METLZ4.865e-2935.26Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_COLP36.353e-2935.08Anthranilate phosphoribosyltransferase OS=Colwelli... [more]
TRPD_NATPD8.298e-2939.44Anthranilate phosphoribosyltransferase OS=Natronom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835935 ID=CF835935; Name=CF835935; organism=Citrus sinensis; type=EST; length=785bp
GTATTCAACATAACATAATACATTCCTTAAGCCAATACTTTTGATATACT
ACAATAAACAATATTAATTTTAGGGACCTTCTAATTTCTTCTAATAGTTG
ATCGACAAGACGTGCATAAGCAAGCCAACTTTTGACCTACCTGTTATTCA
TGGTACTGCAATGAAGTCTTTCTTAGGCTTCAAAACTCCATTACTCATGC
ACAAGCAAATGCTTTGAGACTTCTATCCATAAATCCAGTGTATTAAGAGC
TTTCCCTGATAATTGAATTTCACGTGCCAGGGCTACACCCTCAGCCAAGG
TGTTCACTTTGCAACTGACCAACAGCGCTGCTGCAGCATTTAGGATTAAT
GCATCAGCTATTGCCCCTCTTTCTCCAGACAGTACACGCCTTAAGACCTC
TGCATTATATGCTGGGCCTCCACCTTGCAAGCTTTCTAAAGTGCAGCGCG
GAATGCCGTAGTCCAATGGATCAAATGAGAATCTCTCAATTTTTTCTTGG
GTGACATCAAGGATCAGACCAGGTCCAAGGGGACTCATCTCATCCAAACC
CTCTGAGTGAACAACCAATGCTCTTTTCAGGCCAAATCGTTGCAATGCAT
TGGCCATTTTGAGTACCAAGTTTTCATTGTAAACACCAACCACAGCGAAT
GGCACACATGCAGGATTCAACATAGGACCCAATATATTGAATACAGTTTT
TACTTTGAGCTTTTTCCTCACTGGCCTGACAAACTTCATTGCAGGGTGAT
ACTTTGTCGACATCATGAAACCAATTCCTGCCTCA
back to top