CF835935

Overview
NameCF835935
Unique NameCF835935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_MYCVP (Anthranilate phosphoribosyltransferase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 62/201 (30.85%), Postives = 94/201 (46.77%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 784
            E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA      G    LVVH  +GLDE++      I  V    +ER +FDP  +G  R  +  L GG    NA   R VL G +G              +    +++ A+       G+A A++   SG A   L  W+  ++ L
Sbjct:  165 EVGIGFAFAPQFHPSYRHAGAVRREIGVPTVFNLLGPLTNPASPRAGLIGCAWADLAEVMAGVFATRG-SSVLVVHGDDGLDELTTTTTSTIWRVQAGTVERLTFDPAAFGFARAHVSELTGGDAESNAASARAVLGGAKGPVRDAVVLNAAGALVAHAGLSSDAKWVPAWESGLARAKDAIDSGAAEQLLARWVRFTQQL 364          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_BUCBP (Anthranilate phosphoribosyltransferase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trpD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  371 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 784
            E  I F+ + +YH   K V  VRK L++KT+FNI+ P+LNPA     V+GV N  L+L +A  L+      A++V S+ +DE++      I+++    I  +   P D+G+  C    + GG    N  +++++L G+
Sbjct:  143 ELNICFLFAPQYHINFKVVTQVRKILRIKTIFNIIAPLLNPAMPKLTVMGVCNFKLMLPIAQVLKTLNYHHAIIVCSDNIDEVTLHSFTKIIELKNNNITSYILHPDDFGVKYCHKNDILGGNTEENYNIIKKILQGK 280          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHOBA (Anthranilate phosphoribosyltransferase OS=Rhodopirellula baltica GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 54/173 (31.21%), Postives = 87/173 (50.29%), Query Frame = -2
Query:  269 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALARE 784
            + GI F  + K HPAM+ V  VR+KL V T+FN+LGP+ NPA     ++G        K+A AL     +R+ V+H+ +G DE+S  G    ++V     +  ++ P D+G+      +L    P  +AE++R +  G  G               +  +V++L EGV +A E
Sbjct:  154 DIGICFCFAAKLHPAMRHVVSVRRKLAVPTLFNLLGPLCNPAGATHQLLGTAAPETQQKIAAALAELDTQRSYVLHAQDGQDEVSLDGETSCIEVASGTQQNHTWTPADFGLTPVHQNALAAADPPESAEIIRNLFGGSPGSHRDTVLAGCAAALRLVGRVSSLTEGVEIAAE 326          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_MYCLE (Anthranilate phosphoribosyltransferase OS=Mycobacterium leprae GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 64/203 (31.53%), Postives = 98/203 (48.28%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 784
            E GIGF  +  + P+ ++   VR ++ V TVFNILGP+ NPA     ++G    NL   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP+++G  R  L+ L GG    NA  +R VL+G +G              +    +++ AE       G+A A     SG A   L  W+  S+ +
Sbjct:  167 EIGIGFCFAPLFQPSYRYASAVRHEIGVPTVFNILGPLTNPAWPRAGLIGCAFGNLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVQAGTVDKLTFDPVEFGFARAHLDDLLGGDAQTNAAKVRAVLAGAKGPVRDAVVLNAAGAIVAYAGLSSHAEWSPAWDDGLARASAAIDSGAAEQLLARWVRFSQQV 366          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_MYCLB (Anthranilate phosphoribosyltransferase OS=Mycobacterium leprae (strain Br4923) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 64/203 (31.53%), Postives = 98/203 (48.28%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 784
            E GIGF  +  + P+ ++   VR ++ V TVFNILGP+ NPA     ++G    NL   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP+++G  R  L+ L GG    NA  +R VL+G +G              +    +++ AE       G+A A     SG A   L  W+  S+ +
Sbjct:  167 EIGIGFCFAPLFQPSYRYASAVRHEIGVPTVFNILGPLTNPAWPRAGLIGCAFGNLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVQAGTVDKLTFDPVEFGFARAHLDDLLGGDAQTNAAKVRAVLAGAKGPVRDAVVLNAAGAIVAYAGLSSHAEWSPAWDDGLARASAAIDSGAAEQLLARWVRFSQQV 366          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_DICT6 (Anthranilate phosphoribosyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 57/181 (31.49%), Postives = 88/181 (48.62%), Query Frame = -2
Query:  251 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH--SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGK 784
            E GIG + +  +HP +     VR++L + T+FN+ GPMLNPA +   ++GVY+E ++  MA A         L  H   +G+DE+S  G  +   +   KI+ F F P D GI R   E  +GG    NA++L  +  G  +                V  KV ++ EG  + +E  + GK
Sbjct:  143 EKGIGIIFAPYFHPVVGKAVKVRRELGIGTIFNMAGPMLNPANLSGQILGVYSEKVMRNMAEASLILKKDNILFYHGKDDGIDEISLSGKTIFAYLKNGKIDYFDFSPEDIGIKRYQKEEFKGGDAQENAKILEDIFKGVAKESHIDIVAVNSAFALWVLGKVKSVKEGFDMVKEHIMKGK 323          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_COREF (Anthranilate phosphoribosyltransferase OS=Corynebacterium efficiens GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  374 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQE-KIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 769
            F+ +  Y+PA+   +PVRK LKV T+FN+LGP+L+P    F ++GV N      +    +  G  RALVVH  G DE++  G   + ++  + +I  +   P + G+ RC L  L GG    NA  +R +  G
Sbjct:  153 FLFAPAYNPAIAHAQPVRKALKVPTIFNVLGPLLSPVRPEFQIMGVANPRHGQMLTEVFRELGRTRALVVHGAGTDEIAVHGTTQVWELKADGEIISYEITPEELGVERCDLTDLVGGDGVENARHMRAIFDG 285          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_LEIXX (Anthranilate phosphoribosyltransferase OS=Leifsonia xyli subsp. xyli GN=trpD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.271e-17
Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = -2
Query:  365 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 778
            GI F  ++ +HP       VR +L V TVFNILGP+ NPA    + VGV   + V  +    Q  G    +    +GLDE+S  G   + +V++  +     DP D G+P   +E L G   A+NA V+R VL+G+ G
Sbjct:  150 GITFAFASAFHPGFANAAAVRSQLGVPTVFNILGPLCNPARPEASAVGVAPLDRVPLIVGVFQTRGATALVFRGDDGLDELSTTGHSHVWEVSRGLVTEHDIDPRDLGLPTAQIEDLLGKDAAHNAAVVRAVLAGQEG 287          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CELJU (Anthranilate phosphoribosyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.271e-17
Identity = 59/191 (30.89%), Postives = 95/191 (49.74%), Query Frame = -2
Query:  236 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG----XXXXXXXXXXXXXXLVSCKVNTLAEGVALAREI---QLSGKALNTL 784
            E G+GFM +  +H AMK     R++L ++T+FN+LGP+ NPA V   V+GV+N  L   MA  L R G +  +VVH+ +GLDE+S      + ++   +I  +   P D+G+   +L  L       +  ++R  L   RG                   VS    +L++GV +AR+     L+G+ +  L
Sbjct:  145 EIGVGFMFAPSHHSAMKHAIGPRRELGMRTIFNMLGPLTNPANVKRQVIGVFNGELCKPMAEVLGRLGSEHVMVVHAKDGLDEISLATETQVAELKGGEIREYIIKPEDFGMQSKSLIGLSVSNAEDSLLLIRDALGNRRGQYAEKAADIIALNAGAAIYVSGVAGSLSDGVEMARDAIGSSLAGEKIREL 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CALMQ (Anthranilate phosphoribosyltransferase OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.271e-17
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = -2
Query:  215 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 769
            F  +  YHPAMK V PVR++L ++T+FN++GP+ NP  V   V+GV    ++  MA A    G    L+VH E G+DE+S  G  +I +V    I+++  +P + G+    L  +    P  + E  +R L G                  V+ KV    +GV   ++I     A N+ D W  V+
Sbjct:  148 FAFAPMYHPAMKNVMPVRRRLGIRTIFNLVGPLANPGLVRRQVLGVAEAGIMGVMAEAAGLIGYDHLLLVHGEPGIDEVSVFGRTMIYEVKGNSIDKYVIEPPELGLRIHELRDVVVSNPMESIEKAKRGLMGVDEAALDFIAANTAMALYVAGKVKDPRDGVEAVKQI-----AGNSNDFWSYVN 328          
The following BLAST results are available for this feature:
BLAST of CF835935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_MYCVP1.124e-1730.85Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_BUCBP1.124e-1732.61Anthranilate phosphoribosyltransferase OS=Buchnera... [more]
TRPD_RHOBA1.468e-1731.21Anthranilate phosphoribosyltransferase OS=Rhodopir... [more]
TRPD_MYCLE1.468e-1731.53Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCLB1.468e-1731.53Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_DICT61.468e-1731.49Anthranilate phosphoribosyltransferase OS=Dictyogl... [more]
TRPD_COREF1.468e-1735.34Anthranilate phosphoribosyltransferase OS=Coryneba... [more]
TRPD_LEIXX3.271e-1736.23Anthranilate phosphoribosyltransferase OS=Leifsoni... [more]
TRPD_CELJU3.271e-1730.89Anthranilate phosphoribosyltransferase OS=Cellvibr... [more]
TRPD_CALMQ3.271e-1731.18Anthranilate phosphoribosyltransferase OS=Caldivir... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835935 ID=CF835935; Name=CF835935; organism=Citrus sinensis; type=EST; length=785bp
GTATTCAACATAACATAATACATTCCTTAAGCCAATACTTTTGATATACT
ACAATAAACAATATTAATTTTAGGGACCTTCTAATTTCTTCTAATAGTTG
ATCGACAAGACGTGCATAAGCAAGCCAACTTTTGACCTACCTGTTATTCA
TGGTACTGCAATGAAGTCTTTCTTAGGCTTCAAAACTCCATTACTCATGC
ACAAGCAAATGCTTTGAGACTTCTATCCATAAATCCAGTGTATTAAGAGC
TTTCCCTGATAATTGAATTTCACGTGCCAGGGCTACACCCTCAGCCAAGG
TGTTCACTTTGCAACTGACCAACAGCGCTGCTGCAGCATTTAGGATTAAT
GCATCAGCTATTGCCCCTCTTTCTCCAGACAGTACACGCCTTAAGACCTC
TGCATTATATGCTGGGCCTCCACCTTGCAAGCTTTCTAAAGTGCAGCGCG
GAATGCCGTAGTCCAATGGATCAAATGAGAATCTCTCAATTTTTTCTTGG
GTGACATCAAGGATCAGACCAGGTCCAAGGGGACTCATCTCATCCAAACC
CTCTGAGTGAACAACCAATGCTCTTTTCAGGCCAAATCGTTGCAATGCAT
TGGCCATTTTGAGTACCAAGTTTTCATTGTAAACACCAACCACAGCGAAT
GGCACACATGCAGGATTCAACATAGGACCCAATATATTGAATACAGTTTT
TACTTTGAGCTTTTTCCTCACTGGCCTGACAAACTTCATTGCAGGGTGAT
ACTTTGTCGACATCATGAAACCAATTCCTGCCTCA
back to top