CF835935

Overview
NameCF835935
Unique NameCF835935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11761 contig Csv1_Contig11761:628..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_SHESM (Anthranilate phosphoribosyltransferase OS=Shewanella sp. (strain MR-4) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = -2
Query:  215 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKV-NTLAEGVALAREIQLSGKALNTLDLWIEVS 769
            F+ +  YH  +K   PVR+ LK +T+FN+LGP++NPA   F ++GVY+  LV  +A  LQ  G +RA+VVH  GLDE++  G   + ++   +I  +   P D+G+P+  +  L+GG PA NA++ + +L G+                L  C + +++  G ALA     SGKA   L+   +VS
Sbjct:  157 FLFAPHYHGGVKHAVPVRQALKTRTIFNVLGPLINPARPEFMLLGVYSPELVTPIARVLQALGTQRAMVVHGSGLDEVALHGSTQVAELKDGEIIEYQLTPADFGVPQAQMSELEGGEPAQNAQITQSILQGQGSDAHTHAVAINAGCALYLCGLSDSVKAGTALALNTIKSGKAFELLNQLAKVS 342          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHORT (Anthranilate phosphoribosyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 71/190 (37.37%), Postives = 100/190 (52.63%), Query Frame = -2
Query:  218 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 784
            E GIGFM + ++H AMK V P R +L  +T+FN+LGP+ NPA   F ++GV+ +  V  +A  L R G +RA VVH S+GLDE++  GP  + +     +  F   P D G+P    E LQG  P  NA+ LR +L G +               +V+     LA G A A +   SG A +TL   I +
Sbjct:  152 EVGIGFMFAQRHHSAMKHVAPARSELGTRTIFNLLGPLANPAGARFELMGVFAQEWVEPLAEVLGRLGAERAWVVHGSDGLDEITTTGPTHVAEFRGGVVRSFDITPADAGLPLAKAEDLQGADPEANAQALRALLEGVKTPYRDIVVFNAAAALVVAGAAEDLATGAARAAQAIDSGAAKDTLARMIAI 341          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_IDILO (Anthranilate phosphoribosyltransferase OS=Idiomarina loihiensis GN=trpD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 55/135 (40.74%), Postives = 87/135 (64.44%), Query Frame = -2
Query:  374 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 778
            G  F+ +  YHP +K   PVR+ LK +T+FN++GP++NPA     ++GVY+E  V  MA  LQR G+KRA+VVH  GLDE++  GP  ++++   ++  +   P D+G+P   L+ L+GG   +NA +L  +L+G
Sbjct:  144 GFCFLFAPHYHPGIKHAMPVRQTLKTRTLFNLIGPLVNPARPDAQLLGVYSEEWVRPMAETLQRLGVKRAMVVHGSGLDELALHGPTRVIELRNGELNDYHVTPNDFGVPSAPLDELKGGDADFNARILEDILAG 278          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_CHRVO (Anthranilate phosphoribosyltransferase OS=Chromobacterium violaceum GN=trpD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 66/194 (34.02%), Postives = 107/194 (55.15%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            E G+GFM +  +H AMK V P+RK+L  +T+FNILGP+ NPA     ++GV++ +LV   +  L+  G +  ++VH  +GLDE++  GP ++ ++   +I  +  +P ++G P C L+ L+    A + + L  VL G+ G                +    +LA+GV +ARE   SGKA   L   I +S+ L
Sbjct:  147 EIGLGFMFAPNHHSAMKHVAPIRKELGARTIFNILGPLTNPAAADHQLMGVFHPDLVGIQSRVLKMLGSRHVMIVHGCDGLDELTLSGPSMVAELKNGEILEYELEPGEFGFPLCELKDLRADTAAQSRDRLLAVLDGQPGPARDIVLLNAGAAIYTADIAPSLADGVTMAREALDSGKAKQKLQQLIALSRKL 340          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_ROSCS (Anthranilate phosphoribosyltransferase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 76/193 (39.38%), Postives = 107/193 (55.44%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDV-TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            +AGIGFM + K+HPAM+FV PVR+++ ++T+FN LGP+ NPA      +GV +  L  KMA AL   G + ALVVH   GLDE++  GP L+++V    K  R+     D G+     E+L GG  + N  ++R +LSG ERG              + +     L EG+  AR+   SG AL  L+  I VS
Sbjct:  144 QAGIGFMFAQKFHPAMRFVGPVRREIGIRTIFNALGPLSNPAQARHQTLGVADPALAEKMARALYLLGAQHALVVHGHGGLDELTLSGPNLVIEVRAGHKPRRYEVSAGDLGLTPAPREALLGGDVSTNVAIVRAILSGEERGARRDVALLNAAAALVAADYAADLREGLQQARQSLESGAALARLERLITVS 336          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_PELCD (Anthranilate phosphoribosyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 66/192 (34.38%), Postives = 108/192 (56.25%), Query Frame = -2
Query:  212 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 784
            E GIGF+ +   H AM++    R+++ ++T+FNILGP+ NPA     V+GVY E+LV  +A+ L R G +R  VVH  +G+DE++   P  I D+ + +    +  P DYG+ RC LE L GG   +NAE++R +L+GE G              + + K +++ +G+  A +      AL  L+  I +++
Sbjct:  160 EEGIGFLFAPALHGAMRYAIGPRREIGIRTIFNILGPLTNPAGADRQVLGVYREDLVATLADVLCRLGCRRGFVVHGMDGMDEVTLTAPTRIADIREGRYSLSTIAPEDYGLQRCRLEDLAGGDARHNAELVRGILAGEAGPRRDIVLLNSAFALVAAGKADSIEDGMRAAAQAIDEHAALAKLNALIRMTQ 351          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_NITHX (Anthranilate phosphoribosyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 75/191 (39.27%), Postives = 100/191 (52.36%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV++   V  +A  L+  G     VVH S+GLDE++  GP  +  +    I  F   P D G+ R   ++L+GG    NA  LR VL G  G              +V+ K  TL +GVA       SG A+N L   I VS
Sbjct:  145 EAGIGFMFAPSHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVTRQMVGVFSRQWVQPLAQVLKNLGSDSVWVVHGSDGLDEITLAGPTFVAALENGNIRSFEVTPEDAGLSRAHGDALKGGDAEANAASLRGVLEGRPGAFRDVALLNAAAALIVAGKAKTLKDGVAFGTTSLDSGAAMNKLKQLIAVS 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_MOOTA (Anthranilate phosphoribosyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 72/192 (37.50%), Postives = 104/192 (54.17%), Query Frame = -2
Query:  221 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKA---LNTLDLWIE 784
            E G+ F+ +  +H AMK+    R+++ ++T FN+LGP+ NPA  P  +VGVY+ +L   +A  L R G +RA VVH S+GLDE++  GP  I  + +  I  ++F P D G+PR  L  L GG    NA + R VLSG RG              L +   +TL + +ALA     SG A   L  +  W+E
Sbjct:  144 EVGMAFLFAPVFHGAMKYAAGPRREIGIRTAFNLLGPLTNPAGAPCQLVGVYDPDLTETVAAVLGRLGSRRAYVVHGSDGLDEVTITGPSKITCLDKGAIRTYTFTPEDVGLPRANLADLAGGTATDNAAIARAVLSGTRGPARDVVLINAAFALLAAGAADTLQQALALAESSIDSGAAAAKLQAMVAWVE 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_HERA2 (Anthranilate phosphoribosyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 69/193 (35.75%), Postives = 108/193 (55.96%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFS-FDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSC-KVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            +AGIGFM + K+HPAM++  PVR+++ ++T+FN+LGP+ NPA   + V+GV N  L  K+ANAL + G++RALVVH S+GLDE+S     L+ DV      + S   P D+G+     E++ GG    N  + + +L G                 LV+C + ++  E +  A++   +G A   +   IE S
Sbjct:  144 QAGIGFMFAPKFHPAMRYAGPVRREIGIRTIFNVLGPLTNPARAEYQVIGVANAGLAEKLANALSKMGIRRALVVHGSDGLDEISISASTLVFDVRAGATPQASTISPSDFGLSLAPREAIAGGSVEENVAMTKAILEGSDTGPRRDIVLLNAAAALVACERADSFGEALRQAQQAIDTGSANQRMQRMIEAS 336          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_SHESR (Anthranilate phosphoribosyltransferase OS=Shewanella sp. (strain MR-7) GN=trpD PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = -2
Query:  215 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKV-NTLAEGVALAREIQLSGKALNTLDLWIEVS 769
            F+ +  YH  +K   PVR+ LK +T+FN+LGP++NPA   F ++GVY+  LV  +A  LQ  G +RA+VVH  GLDE++  G   + ++   +I  +   P D+G+P+  +  L+GG PA NA++ + +L G+                L  C + +++  G ALA     SGKA   L+   +VS
Sbjct:  157 FLFAPHYHGGVKHAVPVRQALKTRTLFNVLGPLINPARPEFMLLGVYSPELVTPIARVLQALGTQRAMVVHGSGLDEVALHGSTQVAELKDGEIIEYQLTPADFGVPQAQISELEGGEPAQNAQITQSILQGQGSDAHTHAVAINAGCALYLCGLSDSVKAGTALALNTIKSGKAFELLNQLAKVS 342          
The following BLAST results are available for this feature:
BLAST of CF835935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_SHESM2.669e-2734.95Anthranilate phosphoribosyltransferase OS=Shewanel... [more]
TRPD_RHORT2.669e-2737.37Anthranilate phosphoribosyltransferase OS=Rhodospi... [more]
TRPD_IDILO2.669e-2740.74Anthranilate phosphoribosyltransferase OS=Idiomari... [more]
TRPD_CHRVO2.669e-2734.02Anthranilate phosphoribosyltransferase OS=Chromoba... [more]
TRPD_ROSCS3.486e-2739.38Anthranilate phosphoribosyltransferase OS=Roseifle... [more]
TRPD_PELCD3.486e-2734.38Anthranilate phosphoribosyltransferase OS=Pelobact... [more]
TRPD_NITHX3.486e-2739.27Anthranilate phosphoribosyltransferase OS=Nitrobac... [more]
TRPD_MOOTA3.486e-2737.50Anthranilate phosphoribosyltransferase OS=Moorella... [more]
TRPD_HERA23.486e-2735.75Anthranilate phosphoribosyltransferase OS=Herpetos... [more]
TRPD_SHESR4.553e-2734.95Anthranilate phosphoribosyltransferase OS=Shewanel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835935 ID=CF835935; Name=CF835935; organism=Citrus sinensis; type=EST; length=785bp
GTATTCAACATAACATAATACATTCCTTAAGCCAATACTTTTGATATACT
ACAATAAACAATATTAATTTTAGGGACCTTCTAATTTCTTCTAATAGTTG
ATCGACAAGACGTGCATAAGCAAGCCAACTTTTGACCTACCTGTTATTCA
TGGTACTGCAATGAAGTCTTTCTTAGGCTTCAAAACTCCATTACTCATGC
ACAAGCAAATGCTTTGAGACTTCTATCCATAAATCCAGTGTATTAAGAGC
TTTCCCTGATAATTGAATTTCACGTGCCAGGGCTACACCCTCAGCCAAGG
TGTTCACTTTGCAACTGACCAACAGCGCTGCTGCAGCATTTAGGATTAAT
GCATCAGCTATTGCCCCTCTTTCTCCAGACAGTACACGCCTTAAGACCTC
TGCATTATATGCTGGGCCTCCACCTTGCAAGCTTTCTAAAGTGCAGCGCG
GAATGCCGTAGTCCAATGGATCAAATGAGAATCTCTCAATTTTTTCTTGG
GTGACATCAAGGATCAGACCAGGTCCAAGGGGACTCATCTCATCCAAACC
CTCTGAGTGAACAACCAATGCTCTTTTCAGGCCAAATCGTTGCAATGCAT
TGGCCATTTTGAGTACCAAGTTTTCATTGTAAACACCAACCACAGCGAAT
GGCACACATGCAGGATTCAACATAGGACCCAATATATTGAATACAGTTTT
TACTTTGAGCTTTTTCCTCACTGGCCTGACAAACTTCATTGCAGGGTGAT
ACTTTGTCGACATCATGAAACCAATTCCTGCCTCA
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