CF835935

Overview
NameCF835935
Unique NameCF835935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11761 contig Csv1_Contig11761:628..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHIL3 (Anthranilate phosphoribosyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 65/193 (33.68%), Postives = 102/193 (52.85%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            EAG+GFM +  +H AM+ V P R +L  +T+FN+LGP+ NPA V   ++GV++   ++ +A  ++  G +   VVH +GLDE++  G   +  +   KI  F   P D+G+  C L  ++GG    NA  LR VL G +               +++ KV T+ +G+ LA +   SG     LD  I VS  +
Sbjct:  145 EAGVGFMFAQMHHSAMRHVGPSRVELGTRTIFNLLGPLSNPAGVRRQLLGVFSPQWLVPLAEVMRDLGSECVWVVHGDGLDEITTTGITKVAALEDGKIRTFELSPADFGVSPCVLADIKGGDGVANAAALREVLGGAKNAYRDVSLANAAASLVIAGKVETIHDGMTLAAQSLDSGATALALDKLIAVSNDI 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_PYRAB (Anthranilate phosphoribosyltransferase OS=Pyrococcus abyssi GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = -2
Query:  371 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 769
            F+ +  YHPA+K + PVR++LKVKTVFNILGP+ NPA   F V+GV + +LV KMA AL   G++RALVVH  GLDE++P G  ++ +V  E I+ ++  P D+G+ R  ++ +    P  +AE ++ VL GE
Sbjct:  140 FIFAPMYHPALKRIMPVRRELKVKTVFNILGPLANPAEPKFQVLGVNSPDLVEKMAEALSFLGVERALVVHGMGLDEVNPRGETIVAEVNGEDIDMYTLTPEDFGVER--VKVVPCNSPQESAERIKAVLRGE 270          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METPP (Anthranilate phosphoribosyltransferase OS=Methylibium petroleiphilum (strain PM1) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            E+GIGFM +  +HPAMK   PVRK+L V+T+FNILGP+ NPA  P  ++GV++ +LV      LQR G +  LVV+   G+DE+S  G  LI ++   ++  ++  P D+G+P      L+      +   +RR L+ E G                +    ++ EGV  ARE   SG A  TL+ ++  ++ L
Sbjct:  147 ESGIGFMFAPNHHPAMKHAGPVRKELGVRTIFNILGPLTNPAGAPNQLMGVFHPDLVGIQVRVLQRLGSRHVLVVYGMNGMDEISLSGETLIGELKDGEVREYTVHPSDFGLPVYDTRGLKVASKDESVGCIRRALADEAGPVRDIVLLNAGAALYAADVAPSIGEGVRQAREAVASGAAAKTLERFVATTRRL 340          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METPB (Anthranilate phosphoribosyltransferase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 72/191 (37.70%), Postives = 100/191 (52.36%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAG+ FM +  +H AM+ V PVR +L  +T+FN+LGP+ NPA V   V GV        +   L   G +R   VH S+GLDE++  GP  ++ +    +  F+ DP + G+P  TL+ L+GG P +NA  L  VL G R               +V+    TLAEGVA A+    SG A  TL   + VS
Sbjct:  145 EAGLCFMFAQTHHGAMRHVAPVRTELPFRTIFNMLGPLSNPAGVTAQVFGVSRPAWAEPLTRVLATLGSRRVWTVHGSDGLDEITTTGPTAVIALEDGALSHFTIDPREVGLPLATLDDLRGGDPDHNAAALSAVLEGARSAYRDIAVLNAGAGLVVAGAAGTLAEGVARAQGAIDSGAARATLARLVAVS 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METMA (Anthranilate phosphoribosyltransferase OS=Methanosarcina mazei GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 66/178 (37.08%), Postives = 98/178 (55.06%), Query Frame = -2
Query:  245 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKAL 778
            GIGFM +  +HPAMK V  VRKKL V+TVFNILGP+ NPA     VVGV+++NL   +A AL   G + ALVVH +G+DE++  G   + ++   K+  ++  P   G+ R +    +GG P  NA  L  +  G++G               VS  V ++ + + +A +   SGK +
Sbjct:  148 GIGFMFAPVFHPAMKRVAGVRKKLGVRTVFNILGPLTNPAGAKGQVVGVFDKNLCEPIAYALAELGTEHALVVHGDGMDEITNTGETYVAELKNGKVSTYTLTPESLGMLRASPGDTKGGSPKENARDLLCIFKGQKGPKRDLIILNAAAALYVSGIVGSIRQAIPIAEDAIDSGKVM 325          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_BACCR (Anthranilate phosphoribosyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 69/193 (35.75%), Postives = 101/193 (52.33%), Query Frame = -2
Query:  203 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHLL 778
            GI F+ +   HPA+  +  +RK+L V T+FN++GP+ NP  +    VG+Y  +++L +A  LQ+ G K+ALVV+  G LDE S  G   ++ +   +I   S DP  YG  R   E ++GG    NA++   VLSGE+                 + K  T+ EG+ LA     SGKAL  L+L I  S   L
Sbjct:  145 GIAFLFAPAMHPALTRIMKIRKELNVPTIFNLIGPLTNPVNLETQFVGIYKRDMLLPVAQVLQKLGRKQALVVNGSGFLDEASLQGENHVVILKDNEIVEMSIDPEKYGFSRVKNEEIRGGNSKENAKITLEVLSGEKSVYRDTVLLNAGLALFANGKTETIEEGIKLAAHSIDSGKALAKLNLLIVASNEKL 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHILW (Anthranilate phosphoribosyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 65/193 (33.68%), Postives = 103/193 (53.37%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            EAG+GFM +  +H AM+ V P R +L  +T+FN+LGP+ +PA V   ++GV++   ++ +A  ++  G +   VVH +GLDE++  G   +  +   KI  F   P D+G+  C L  ++GG    NA  LR VLSG +               +++ KV T+ +G+ LA +   SG     LD  I VS  +
Sbjct:  145 EAGVGFMFAQLHHSAMRHVGPSRVELGTRTIFNLLGPLSSPAGVRRQLLGVFSPQWLVPLAEVMRDLGSECVWVVHGDGLDEITTTGITKVAALEDGKIRTFELSPADFGVSPCVLADIRGGDGVANAAALREVLSGAKNAYRDISLANAAASLVIAGKVETIRDGMTLAAQSLDSGATALALDKLIAVSNDI 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METSB (Anthranilate phosphoribosyltransferase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 68/190 (35.79%), Postives = 101/190 (53.16%), Query Frame = -2
Query:  215 AGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 781
            AG+ FM +  +H AM+ V   R +L  +T+FNILGP+ NPA V F ++GVY ++ +  +A AL+  G  R  +VH ++GLDE +  GP  ++ +    I  F   P D G+ R  L  L+GG PA+NA  L+ VL G +               +V+ +   L EG  LA      G+A +TL   +E S
Sbjct:  146 AGVAFMSAQAHHAAMRHVAAARAELGTRTIFNILGPLANPAGVKFQLLGVYAKSWLEPLAQALRALGSTRVWLVHGADGLDEATTTGPTHVVALENGAIRAFDITPEDAGLQRAALADLKGGSPAFNAAALKAVLEGRKSPYRDIAILNAAAALIVAGRAADLREGARLAAAAIDDGRAASTLSKLVEAS 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_LARHH (Anthranilate phosphoribosyltransferase OS=Laribacter hongkongensis (strain HLHK9) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 68/194 (35.05%), Postives = 105/194 (54.12%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            E G+GFM +  +H AMK+V PVR++L V+T+FNILGP+ NPA     ++GV++ +LV   A  L + G + A+VVH  +GLDE+S  GP L+ ++    I  +  DP ++G   C+   L       +   L  VL  + G               V+   ++LAEG+ LA+E+  SG A   L   +E++  L
Sbjct:  147 EIGLGFMFAPNHHTAMKYVAPVRRELGVRTIFNILGPLTNPAGAENQLMGVFHPDLVGIQARVLSQLGARHAMVVHGRDGLDEISLSGPTLVAELKNGWIREYELDPAEFGFSLCSAADLAAPTAEDSKARLLAVLDNQPGPARDIVCLNAGAAIYVAGVTDSLAEGIRLAQELLTSGAARQKLGQLVELTHKL 340          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_BRASO (Anthranilate phosphoribosyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=trpD PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 73/191 (38.22%), Postives = 101/191 (52.88%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV++   V  +A  L+  G   A VVH S+GLDE++  GP  +  +    I  F   P + G+  C  E L+GG  A NA  L+ VL G                 +V+ +  +L EGVA+ ++   SG A   L   I VS
Sbjct:  145 EAGIGFMFAPAHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMVGVFSRQWVEPLAQVLKNLGSGAAWVVHGSDGLDEITLTGPTFVAALENGHIRTFEISPEEAGLGLCDSEGLKGGDAAANAVALQSVLDGLPSPYRDVALLNAAAALVVAGRAKSLKEGVAIGKDSLDSGAAAGRLKQLIAVS 335          
The following BLAST results are available for this feature:
BLAST of CF835935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_RHIL31.730e-2633.68Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_PYRAB1.730e-2646.62Anthranilate phosphoribosyltransferase OS=Pyrococc... [more]
TRPD_METPP1.730e-2635.05Anthranilate phosphoribosyltransferase OS=Methylib... [more]
TRPD_METPB1.730e-2637.70Anthranilate phosphoribosyltransferase OS=Methylob... [more]
TRPD_METMA1.730e-2637.08Anthranilate phosphoribosyltransferase OS=Methanos... [more]
TRPD_BACCR1.730e-2635.75Anthranilate phosphoribosyltransferase OS=Bacillus... [more]
TRPD_RHILW2.260e-2633.68Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_METSB2.260e-2635.79Anthranilate phosphoribosyltransferase OS=Methyloc... [more]
TRPD_LARHH2.260e-2635.05Anthranilate phosphoribosyltransferase OS=Laribact... [more]
TRPD_BRASO2.260e-2638.22Anthranilate phosphoribosyltransferase OS=Bradyrhi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835935 ID=CF835935; Name=CF835935; organism=Citrus sinensis; type=EST; length=785bp
GTATTCAACATAACATAATACATTCCTTAAGCCAATACTTTTGATATACT
ACAATAAACAATATTAATTTTAGGGACCTTCTAATTTCTTCTAATAGTTG
ATCGACAAGACGTGCATAAGCAAGCCAACTTTTGACCTACCTGTTATTCA
TGGTACTGCAATGAAGTCTTTCTTAGGCTTCAAAACTCCATTACTCATGC
ACAAGCAAATGCTTTGAGACTTCTATCCATAAATCCAGTGTATTAAGAGC
TTTCCCTGATAATTGAATTTCACGTGCCAGGGCTACACCCTCAGCCAAGG
TGTTCACTTTGCAACTGACCAACAGCGCTGCTGCAGCATTTAGGATTAAT
GCATCAGCTATTGCCCCTCTTTCTCCAGACAGTACACGCCTTAAGACCTC
TGCATTATATGCTGGGCCTCCACCTTGCAAGCTTTCTAAAGTGCAGCGCG
GAATGCCGTAGTCCAATGGATCAAATGAGAATCTCTCAATTTTTTCTTGG
GTGACATCAAGGATCAGACCAGGTCCAAGGGGACTCATCTCATCCAAACC
CTCTGAGTGAACAACCAATGCTCTTTTCAGGCCAAATCGTTGCAATGCAT
TGGCCATTTTGAGTACCAAGTTTTCATTGTAAACACCAACCACAGCGAAT
GGCACACATGCAGGATTCAACATAGGACCCAATATATTGAATACAGTTTT
TACTTTGAGCTTTTTCCTCACTGGCCTGACAAACTTCATTGCAGGGTGAT
ACTTTGTCGACATCATGAAACCAATTCCTGCCTCA
back to top