CF835936

Overview
NameCF835936
Unique NameCF835936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_TRIEI (Anthranilate phosphoribosyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDV---TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 500
            ADVLEALG+ ++   E V   + E GI F+ +  +HPAMK V P+R+ LKV+TVFN+LGP++NP      ++GVYN  LV  +A AL   G++ A+ +H  G +++   G G I D+   +  +++  S +P   G+    + +LQGG    NAE+L+ VL G+
Sbjct:  137 ADVLEALGIRLNAPTEKVISALSEVGITFLFAPGWHPAMKCVVPLRRTLKVRTVFNLLGPLVNPLRPQAQIIGVYNSTLVKTVAQALGILGVEYAIALH--GREKLDEAGLGDITDIAILSHGEVKATSINPQYLGLNYAPISTLQGGDVEQNAEILKNVLQGK 298          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCVP (Anthranilate phosphoribosyltransferase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 77/224 (34.38%), Postives = 110/224 (49.11%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 665
            AD LEALG+ IDL P+ V RCV E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA      G    LVVH  +GLDE++      I  V    +ER +FDP  +G  R  +  L GG    NA   R VL G +G                   +++ A+       G+A A++   SG A   L  W+  ++ L
Sbjct:  142 ADTLEALGLRIDLGPDEVARCVAEVGIGFAFAPQFHPSYRHAGAVRREIGVPTVFNLLGPLTNPASPRAGLIGCAWADLAEVMAGVFATRG-SSVLVVHGDDGLDELTTTTTSTIWRVQAGTVERLTFDPAAFGFARAHVSELTGGDAESNAASARAVLGGAKGPVRDAVVLNAAGALVAHAGLSSDAKWVPAWESGLARAKDAIDSGAAEQLLARWVRFTQQL 364          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCSS (Anthranilate phosphoribosyltransferase OS=Mycobacterium sp. (strain MCS) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 81/224 (36.16%), Postives = 107/224 (47.77%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 665
            AD LEALGV IDL PE V   V E GIGF  + ++HP+ K    VR++L V TVFN+LGP+ NPA     ++G     L   MA           LVVH  +GLDE++      I  V    +ER +FDP  +G  R  L  L GG   YNA  +R VL G +G                   +++ A+       G+A A E   SG A   L  W+  ++ L
Sbjct:  135 ADTLEALGVRIDLGPEQVAASVAEVGIGFAFANQFHPSYKHASAVRRELGVPTVFNLLGPLTNPARPRAGLIGCAWAELAEVMAGVFASRN-SSVLVVHGDDGLDELTTTTTSTIWRVQAGTVERLTFDPAAFGFQRAHLSELVGGDAEYNAAEVRAVLGGAKGAVRDAVVLNAAGALVAHAGLSSDAKWVPAWEAGLARATETIDSGAAEKLLARWVRFTQKL 357          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCSK (Anthranilate phosphoribosyltransferase OS=Mycobacterium sp. (strain KMS) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 81/224 (36.16%), Postives = 107/224 (47.77%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 665
            AD LEALGV IDL PE V   V E GIGF  + ++HP+ K    VR++L V TVFN+LGP+ NPA     ++G     L   MA           LVVH  +GLDE++      I  V    +ER +FDP  +G  R  L  L GG   YNA  +R VL G +G                   +++ A+       G+A A E   SG A   L  W+  ++ L
Sbjct:  135 ADTLEALGVRIDLGPEQVAASVAEVGIGFAFANQFHPSYKHASAVRRELGVPTVFNLLGPLTNPARPRAGLIGCAWAELAEVMAGVFASRN-SSVLVVHGDDGLDELTTTTTSTIWRVQAGTVERLTFDPAAFGFQRAHLSELVGGDAEYNAAEVRAVLGGAKGAVRDAVVLNAAGALVAHAGLSSDAKWVPAWEAGLARATETIDSGAAEKLLARWVRFTQKL 357          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCSJ (Anthranilate phosphoribosyltransferase OS=Mycobacterium sp. (strain JLS) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 81/224 (36.16%), Postives = 107/224 (47.77%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 665
            AD LEALGV IDL PE V   V E GIGF  + ++HP+ K    VR++L V TVFN+LGP+ NPA     ++G     L   MA           LVVH  +GLDE++      I  V    +ER +FDP  +G  R  L  L GG   YNA  +R VL G +G                   +++ A+       G+A A E   SG A   L  W+  ++ L
Sbjct:  135 ADTLEALGVRIDLGPEQVAASVAEVGIGFAFANQFHPSYKHASAVRRELGVPTVFNLLGPLTNPARPRAGLIGCAWAELAEVMAGVFASRN-SSVLVVHGDDGLDELTTTTTSTIWRVQAGTVERLTFDPAAFGFQRAHLSELVGGDAEYNAAEVRAVLGGAKGAVRDAVVLNAAGALVAHAGLSSDAKWVPAWEAGLARATETIDSGAAEKLLARWVRFTQKL 357          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_ACIBS (Anthranilate phosphoribosyltransferase OS=Acinetobacter baumannii (strain SDF) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 66/221 (29.86%), Postives = 116/221 (52.49%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKV----NTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            +D+LE  G+ +DLD +   RC+ E G+GF+ +  +H AMK+    R++L ++++FN+LGP+ NPA V   V+GV+++ L   +A  +++ G +  +VVHS +GLDE+S   P  I ++   +I  ++ +P D GI   TL  L       + ++++  LS  +                    V     T A+ V  A++I   G+ L  + +  E +K L
Sbjct:  123 SDLLEQAGIHLDLDMQQTERCIREMGVGFLFAPNHHKAMKYAAGPRRELGIRSIFNLLGPLTNPAGVKRFVIGVFSDELCRPIAEVMKQLGAEHVMVVHSKDGLDEISLAAPTTIAELKDGEITEWTLNPEDVGIESQTLNGLVVADATASLKLIKDALSKNKSDIGEKAANMIALNAGAGIYVAGITKTYAQAVVFAQDIIYGGQTLEKMSVLAEFTKTL 343          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_SYNY3 (Anthranilate phosphoribosyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 500
            ADVLEALG+ +    + V   V   GI F+ +  +HPA+K V P+RK LKV+TVFN+LGP++NP      V+GVY+ + +  MA AL+  G  RA+V+H  E LDE     P  I    Q ++     DP ++G+    L +L+GG  A N  +L +VL G+
Sbjct:  130 ADVLEALGLNLQAGADQVAAAVSAVGITFLFAPGWHPALKSVAPIRKTLKVRTVFNLLGPLVNPLRPTGQVIGVYSPDFLSVMAIALKNLGTARAMVLHGREQLDEAGLGAPTDIASFNQGEVTPQVLDPQNFGLAPAPLTALKGGDLAENVTILSQVLQGK 291          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_NOVAD (Anthranilate phosphoribosyltransferase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 71/216 (32.87%), Postives = 107/216 (49.54%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 647
            S    AD LEALG+ +D   E     + + GI F+ + ++HP+M  + P+RK L  +T+FN++GP+ NPA V   +VG+     V   A A+ R G   + V+   EGLDE+S  G   + +V   +I      P D G+P   + +++GG  A+NA  LR +L GE G               ++ +     EGV  A E    G A   L+ WI
Sbjct:  111 SKAGAADTLEALGLNLDRAAETAEETLADLGICFLFAARHHPSMGRIMPIRKALGRRTIFNLMGPLANPANVRRQLVGIARPAYVPIYAEAILRLGTDHSFVISGDEGLDELSLAGGNELAEVRDGEISMRRVTPADAGLPESAVTAIRGGDAAHNARALRALLEGEHGPYRNAVLFNAAAALIIAGEAQDWHEGVEEAAEAIDKGLANALLNCWI 326          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_NOCSJ (Anthranilate phosphoribosyltransferase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 74/215 (34.42%), Postives = 103/215 (47.91%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXV-----SCKVNTLAEGVALAREIQLSGKALNTLDLWI 647
            ADVLE+LG+ +DL    +     E GI F  +  +HPAM++    R++L V T FN LGP+ NPA      +G  +  +   MA    R G+   +    +GLDE++      +  V   ++   S DP D GI R    +L+GG  A+NAEV+RR+L+GE G               V     S     L  GV  ARE   SG A   LD W+
Sbjct:  122 ADVLESLGIRLDLPAARLAEIAAEVGITFCFAAAFHPAMRYAAVPRRELGVGTTFNFLGPLTNPAHAHAQAIGCADPRMAPVMAGVFARRGVDAWVFRGDDGLDELTTTTTSRLWWVHGGEVRETSVDPADLGIARAEAGALRGGDAAHNAEVVRRLLAGETGAVRDAVVLNAGAALAVYDEPGSAPDQALVAGVERARESLDSGAAARVLDRWV 336          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCMM (Anthranilate phosphoribosyltransferase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 78/224 (34.82%), Postives = 109/224 (48.66%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAE-------GVALAREIQLSGKALNTLDLWIEVSKHL 665
            AD LEALGV IDL P+ V R ++E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA      G    LVVH  +GLDE++      I  V    +++ +FDP D+G  R  L  L GG P  NA   R VL G  G                   +++ AE       G+  A     SG A   L  W+  S+H+
Sbjct:  145 ADTLEALGVRIDLGPDQVARSLNEIGIGFCFAPQFHPSYRQASVVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEIMAGVFATRG-SSVLVVHGDDGLDELTTTTTSTIWRVQAGTVDKLTFDPGDFGFARAELSQLLGGDPQANAAEARAVLGGAAGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWQDGLQRAAVAIDSGAAEQLLARWVRFSQHV 367          
The following BLAST results are available for this feature:
BLAST of CF835936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_TRIEI7.796e-2639.63Anthranilate phosphoribosyltransferase OS=Trichode... [more]
TRPD_MYCVP7.796e-2634.38Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCSS7.796e-2636.16Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCSK7.796e-2636.16Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCSJ7.796e-2636.16Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_ACIBS7.796e-2629.86Anthranilate phosphoribosyltransferase OS=Acinetob... [more]
TRPD_SYNY31.330e-2540.74Anthranilate phosphoribosyltransferase OS=Synechoc... [more]
TRPD_NOVAD1.330e-2532.87Anthranilate phosphoribosyltransferase OS=Novosphi... [more]
TRPD_NOCSJ1.330e-2534.42Anthranilate phosphoribosyltransferase OS=Nocardio... [more]
TRPD_MYCMM1.737e-2534.82Anthranilate phosphoribosyltransferase OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835936 ID=CF835936; Name=CF835936; organism=Citrus sinensis; type=EST; length=742bp
CTTCTGCATGTCGATGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATT
GACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGG
TTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAG
TGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTGGGTCCTATG
TTGAATCCTGCATGTGTGCCATTCGCTGTGGTTGGTGTTTACAATGAAAA
CTTGGTACTCAAAATGGCCAATGCATTGCAACGATTTGGCCTGAAAAGAG
CATTGGTTGTTCACTCAGAGGGTTTGGATGAGATGAGTCCCCTTGGACCT
GGTCTGATCCTTGATGTCACCCAAGAAAAAATTGAGAGATTCTCATTTGA
TCCATTGGACTACGGCATTCCGCGCTGCACTTTAGAAAGCTTGCAAGGTG
GAGGCCCAGCATATAATGCAGAGGTCTTAAGGCGTGTACTGTCTGGAGAA
AGAGGGGCAATAGCTGATGCATTAATCCTAAATGCTGCAGCAGCGCTGTT
GGTCAGTTGCAAAGTGAACACCTTGGCTGAGGGTGTAGCCCTGGCACGTG
AAATTCAATTATCAGGGAAAGCTCTTAATACACTGGATTTATGGATAGAA
GTCTCAAAGCATTTGCTTGTGCATGAGTAATGGAGTTTTGAAGCCTAAGA
AAGACTTCATTGCAGTACCATGAATAACAGGTAAGTCAAAAG
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