CF835936

Overview
NameCF835936
Unique NameCF835936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCTU (Anthranilate phosphoribosyltransferase OS=Mycobacterium tuberculosis GN=trpD PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 506
            AD LEALGV IDL P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP  +G  R  L+ L GG    NA  +R VL G RG
Sbjct:  148 ADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 310
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCTA (Anthranilate phosphoribosyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 506
            AD LEALGV IDL P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP  +G  R  L+ L GG    NA  +R VL G RG
Sbjct:  148 ADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 310
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCBT (Anthranilate phosphoribosyltransferase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 506
            AD LEALGV IDL P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP  +G  R  L+ L GG    NA  +R VL G RG
Sbjct:  148 ADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 310
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCBP (Anthranilate phosphoribosyltransferase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 506
            AD LEALGV IDL P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP  +G  R  L+ L GG    NA  +R VL G RG
Sbjct:  148 ADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 310
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_MYCBO (Anthranilate phosphoribosyltransferase OS=Mycobacterium bovis GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 506
            AD LEALGV IDL P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G    +L   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP  +G  R  L+ L GG    NA  +R VL G RG
Sbjct:  148 ADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 310
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_METTH (Anthranilate phosphoribosyltransferase OS=Methanobacterium thermoautotrophicum GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 77/232 (33.19%), Postives = 117/232 (50.43%), Query Frame = 3 
Query:    6 ACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH------SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGG-PAYNAEVLRRVLSG-----ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            +C  AD+LEA GV I+LD     R + + GI FM +  +H A   V  VR+ L  KTVFNILGP+ +PA     ++GV++  LV  +A  L+  G + A+VVH      +  LDE+S +GP L+  +  ++I      P D+G+    LE L+ G   A N E+   VL G     E+                ++   +TL EG   A+    SG AL  L+ ++  +++L
Sbjct:  119 SCGGADILEAAGVNIELDAAAAARSLSDVGISFMFAPLFHRATARVAAVRRSLGFKTVFNILGPLTSPAAAGIQLLGVFDPQLVGPVAEVLRNLGTRCAMVVHGFDANLNPALDEISTVGPTLVAFLEDDEIRIDRLMPPDFGVEVGELEHLRAGSTTAENLELFMDVLRGREDTPEQKSRLDIALANAGALIYLAGLADTLPEGTETAKRTVKSGAALELLEEFVSYTRNL 350
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_METM6 (Anthranilate phosphoribosyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 70/208 (33.65%), Postives = 110/208 (52.88%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF-GLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLD 638
            A+V EALG  I   P+  ++ +++    F+ + KYHP +K + PVR +LKVKT+FNILGP+ NPA   + ++GV +  L   +A AL +  G+K+ALVV+  GLDE++P G   I +    K + +   P D+G+    +   +   P  +A+ L  V SG+                  S   +   +GV +A+E   SGK L  L+
Sbjct:  112 ANVYEALGCKIPETPDDAKKSMEKTNFAFLFAPKYHPTLKKIMPVRNELKVKTIFNILGPLANPANPKYQILGVNSAELSENVAIALSKVGGIKKALVVYGNGLDELTPNGTSKITEY-DGKFDTYEVTPKDFGLDYSKIRPCE--SPDESAKRLIDVFSGKINDDRNFILMNAAGALYTSEIASDFLDGVEIAKEAIESGKVLKKLE 316
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSW (Anthranilate phosphoribosyltransferase OS=Geobacillus sp. (strain WCH70) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 70/204 (34.31%), Postives = 106/204 (51.96%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV-HSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSC-KVNTLAEGVALAREIQLSGKA 623
            ADVLEAL + I   PE  +R +   G+ F+ +  YH AMK+    RK++  +TVFN++GP+ NPA     V+GVY+     K+A  L R G +  L+V   +GLDE S      ++++   +I RF+  P  YG+ R  LE +Q      +AE+L+ VL G                   +  K  T+ EGV +A+E  ++ KA
Sbjct:  120 ADVLEALHIDIQATPEEAKRALKTKGLAFLFAPLYHSAMKYAALPRKEIGFRTVFNLIGPLSNPARCKRQVIGVYSTQYAEKLAETLHRLGSEHVLLVTGKDGLDECSISAETDVVELKHGEIRRFTIAPEQYGLARGKLEHVQVRTVQQSAELLKAVLEGRANESAINIVILNAGVALYAAGKAATIREGVEMAKEAMMTKKA 323
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_GEOKA (Anthranilate phosphoribosyltransferase OS=Geobacillus kaustophilus GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 72/208 (34.62%), Postives = 106/208 (50.96%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRAL-VVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSC-KVNTLAEGVALAREIQLSGKALNTL 635
            ADVLE LG+ I   P   ++ ++  G+ F+ +  YH AMK     RK++  +TVFN++GP+ NPA     VVGVY+     K+A A++R G +  L V   +GLDE S      ++++    I RF   P D G+PR  L  +Q   P  +A +L  V++G                   +  K  T+AEGVA+A+E  LS  A   L
Sbjct:  120 ADVLERLGIDIQTSPSAAKQALETKGLAFLFAPLYHAAMKHAAGPRKEIGFRTVFNLIGPLANPARCKRQVVGVYSTCYAEKLAEAMRRLGSEHVLFVTGRDGLDECSIAAETDVVELKDGAIRRFVIAPEDAGLPRGELADVQVRDPEESAALLEAVMAGTAPESAINIVALNAGAALYAAGKAETIAEGVAMAKEAILSKTAYEQL 327
[Close]
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_COREF (Anthranilate phosphoribosyltransferase OS=Corynebacterium efficiens GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 60/161 (37.27%), Postives = 90/161 (55.90%), Query Frame = 3 
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQE-KIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 497
            ADVLEAL + +DLDPE  +R  + +   F+ +  Y+PA+   +PVRK LKV T+FN+LGP+L+P    F ++GV N      +    +  G  RALVVH  G DE++  G   + ++  + +I  +   P + G+ RC L  L GG    NA  +R +  G
Sbjct:  125 ADVLEALNIPLDLDPERAQRWFEASNFTFLFAPAYNPAIAHAQPVRKALKVPTIFNVLGPLLSPVRPEFQIMGVANPRHGQMLTEVFRELGRTRALVVHGAGTDEIAVHGTTQVWELKADGEIISYEITPEELGVERCDLTDLVGGDGVENARHMRAIFDG 285
The following BLAST results are available for this feature:
BLAST of CF835936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_MYCTU6.600e-2540.36Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCTA6.600e-2540.36Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCBT6.600e-2540.36Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCBP6.600e-2540.36Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_MYCBO6.600e-2540.36Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_METTH6.600e-2533.19Anthranilate phosphoribosyltransferase OS=Methanob... [more]
TRPD_METM66.600e-2533.65Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_GEOSW6.600e-2534.31Anthranilate phosphoribosyltransferase OS=Geobacil... [more]
TRPD_GEOKA6.600e-2534.62Anthranilate phosphoribosyltransferase OS=Geobacil... [more]
TRPD_COREF6.600e-2537.27Anthranilate phosphoribosyltransferase OS=Coryneba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835936 ID=CF835936; Name=CF835936; organism=Citrus sinensis; type=EST; length=742bp
CTTCTGCATGTCGATGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATT
GACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGG
TTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAG
TGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTGGGTCCTATG
TTGAATCCTGCATGTGTGCCATTCGCTGTGGTTGGTGTTTACAATGAAAA
CTTGGTACTCAAAATGGCCAATGCATTGCAACGATTTGGCCTGAAAAGAG
CATTGGTTGTTCACTCAGAGGGTTTGGATGAGATGAGTCCCCTTGGACCT
GGTCTGATCCTTGATGTCACCCAAGAAAAAATTGAGAGATTCTCATTTGA
TCCATTGGACTACGGCATTCCGCGCTGCACTTTAGAAAGCTTGCAAGGTG
GAGGCCCAGCATATAATGCAGAGGTCTTAAGGCGTGTACTGTCTGGAGAA
AGAGGGGCAATAGCTGATGCATTAATCCTAAATGCTGCAGCAGCGCTGTT
GGTCAGTTGCAAAGTGAACACCTTGGCTGAGGGTGTAGCCCTGGCACGTG
AAATTCAATTATCAGGGAAAGCTCTTAATACACTGGATTTATGGATAGAA
GTCTCAAAGCATTTGCTTGTGCATGAGTAATGGAGTTTTGAAGCCTAAGA
AAGACTTCATTGCAGTACCATGAATAACAGGTAAGTCAAAAG
back to top