CF835936

Overview
NameCF835936
Unique NameCF835936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_CORA7 (Anthranilate phosphoribosyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 497
            ADVLEALG+ ++LDP+   R ++ +   F+ +  Y+PA+  V+PVRK L + T+FN +GP+L+P    F ++G+ N      +A   +  G  RALVVH  G DE++  G   + ++    I  +   P D GI    L  L GG    NA+ LR V +G
Sbjct:  125 ADVLEALGIPLNLDPDRAVRQLEASNFTFLFAPAYNPAVAHVQPVRKGLGISTLFNTMGPLLSPGRPEFQIMGIANPEQGQLIAEVFKDLGRTRALVVHGAGTDEIAVHGTTQVWELRDGTISHYELTPEDLGISHHELADLAGGNGEENAKALRAVFAG 284          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPCD_ARCFU (Tryptophan biosynthesis protein trpCD OS=Archaeoglobus fulgidus GN=trpCD PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 61/161 (37.89%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 500
            ADVLEALGV I++D E  R+ + E    F+ +  YH +   V  VR+ L ++T+FN+ GP+ NPA     +VGV +E L++++A A+   G +RA+VV+  G+DE++P      + V    +ER   +P D+GI RC +      G   +AE +R V SG+
Sbjct:  335 ADVLEALGVRIEMDEERARKMIAETNFAFLFAPLYHKSFARVAAVRRNLGIRTIFNVTGPLTNPARPEVQIVGVASEILLVEVAKAMSLLG-RRAVVVYGSGMDEVNP-NSSTDIAVVNGGVERLKLEPEDFGIERCRVLPCSSSGE--SAERIRAVFSGK 491          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_PYRAR (Anthranilate phosphoribosyltransferase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=trpD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.245e-23
Identity = 57/163 (34.97%), Postives = 89/163 (54.60%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 506
            AD +EA+G  +++ PE     V++ G  F+ + +YHPA   V PVR+ L  +T+FNI+GP+ NP  V   ++GV  E L+  +A A    G + A+VVH  G+DE+S  G   + +V +  +ER+   P D G PR  +            E + + L+G RG
Sbjct:  121 ADFMEAVGYNLEVGPEKAAELVEKVGFAFVFAPRYHPAFAKVAPVRRALPFRTIFNIVGPLANPGLVKRQLIGVAEERLLEVVAAAAAELGFEHAVVVHGSGVDEVSSEGATTVYEVKRGSLERYQIAPEDLGAPRVPIPRASD-----KEEAVAKALAGLRG 278          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_PSYWF (Anthranilate phosphoribosyltransferase OS=Psychrobacter sp. (strain PRwf-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.626e-23
Identity = 58/162 (35.80%), Postives = 94/162 (58.02%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 500
            +D+LE  G+ +++ PE  R C++  GIGF+ +  +H AMK   PVR+ LKV+T+FNILGP+ NPA V   VVGV+ +N+   +A+  +  G K  +VV S + LDE+S      + ++   ++  +   P D GI   TL  L       + ++++  LSG+
Sbjct:  140 SDLLEQAGLNLNITPEQTRECIETQGIGFLFAPNHHTAMKHAIPVRRALKVRTIFNILGPLTNPAGVKNLVVGVFTDNMCEPLAHVFKNLGAKHVMVVGSKDRLDEISLATSTKVAELKDGEVTVYDIFPEDAGIDSQTLVGLDVNSSEQSLQLIQAALSGK 301          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_BACLD (Anthranilate phosphoribosyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=trpD PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 73/210 (34.76%), Postives = 106/210 (50.48%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG--XXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLD 638
            ADVLE LGV I   PE   + ++   +GF+ +  YH +MK V   RK L  +TVFN+LGP+ NP      V+GVY+      MA AL+ F  +  L V S +GLDE+S   P  ++++   K   ++ +P D G+P   L  +Q   P  +  ++  +L   RG                 V+ +   L EGVALA E    G+ALN L+
Sbjct:  119 ADVLEYLGVSIQTSPEETIKSIERRNMGFLYAPSYHSSMKHVAGARKDLAFRTVFNLLGPLSNPMKAKRQVIGVYSIEKAKLMARALEAFEPEHVLFVSSRDGLDELSITSPTDVIELKGGKTYEYTVEPGDVGLPLGRLRDIQVATPEESGRLIVDILK-NRGPDSAVHIAAFNAGAALYVAEQAADLKEGVALALEAVAGGEALNQLE 327          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_ALCBS (Anthranilate phosphoribosyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 56/143 (39.16%), Postives = 86/143 (60.14%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL 443
            AD+LE  G+ +DL P  + +CVD  G+GFM +  +H AMK+    RK+L ++T+FNILGPM NPA V   V+GV++E L   +A  + R G +  +VVHS +GLDE+S      + +    +++ +   P D G+   +L  L
Sbjct:  123 ADLLETAGIALDLSPAQIGQCVDNVGVGFMFAPNHHKAMKYAVGPRKELGMRTLFNILGPMTNPAGVQRLVMGVFSEKLCRPLAEVMGRLGGEHIMVVHSKDGLDEISLAARTHVAEFRDGEVKEYDLTPEDLGLGSDSLVGL 265          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_METTM (Anthranilate phosphoribosyltransferase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 76/232 (32.76%), Postives = 118/232 (50.86%), Query Frame = 3
Query:    6 ACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH------SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPA-YNAEVLRRVLSG-----ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            +C  AD+LEA GV I+L PE   R ++  GI FM +  +H A   V PVR++L  KTVFNILGP+ +PA     ++GV++  LV  +A  L+  G+KRA+VVH      +  +DE+S +GP L+  +  ++I      P D+G+    L+ L+       N  +   VL+G      R                ++   +TL  G   ARE   SG AL  ++ +   +++L
Sbjct:  119 SCGGADILEAAGVNIELGPEAACRSLETLGIAFMFAPLFHRATARVAPVRRELGFKTVFNILGPLTSPASAEVQLLGVFDPYLVGPVAEVLRNLGVKRAMVVHGFDGNMNPAMDEISTVGPTLVGFLEDDEIGIKRLMPPDFGVDVGQLQHLKAASTVDGNLRMFMDVLAGLDDTPGRKSRLDIALANAGALIYLAEMEDTLEGGTEAARETVESGAALRLMEDFASFTQNL 350          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_BUCBP (Anthranilate phosphoribosyltransferase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 500
            AD+L+  G+ I + PE  ++ +DE  I F+ + +YH   K V  VRK L++KT+FNI+ P+LNPA     V+GV N  L+L +A  L+      A++V S+ +DE++      I+++    I  +   P D+G+  C    + GG    N  +++++L G+
Sbjct:  120 ADILKKFGINIQISPEKSKKMLDELNICFLFAPQYHINFKVVTQVRKILRIKTIFNIIAPLLNPAMPKLTVMGVCNFKLMLPIAQVLKTLNYHHAIIVCSDNIDEVTLHSFTKIIELKNNNITSYILHPDDFGVKYCHKNDILGGNTEENYNIIKKILQGK 280          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_STAS1 (Anthranilate phosphoribosyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 64/211 (30.33%), Postives = 118/211 (55.92%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQ-EKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKAL 626
            S+    D+LEA+G+      E     +++ G+ F+ +T  +P MK ++P+RK +   T+FNI GP++NP  + + V+GVY  + + K+A  L+  G K+A+VV+ + G+DE +  G  +I +V + E  + ++ +P D G+     E+L GG P  N E+ + +L+G +R                V+ KV+++ +GV  A+ +  +G A+
Sbjct:  114 SSSGSTDLLEAMGINTS-SVEATPSQLNQVGLAFLSATDTYPIMKSIQPIRKMMTNPTIFNITGPIINPFKLDYQVMGVYETSKLEKIAQTLKDLGRKKAIVVYGANGMDEATLSGDNMIYEVNENEATKNYTVNPKDVGLAYAPNEALIGGTPLENLEITKNILTGVDRSAKRDVVVFNAGIALYVAEKVSSIKQGVIEAQRLIDNGNAI 323          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_DICT6 (Anthranilate phosphoribosyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 67/203 (33.00%), Postives = 102/203 (50.25%), Query Frame = 3
Query:   21 DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH--SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGK 620
            DV+EALG     +PE + R +DE GIG + +  +HP +     VR++L + T+FN+ GPMLNPA +   ++GVY+E ++  MA A         L  H   +G+DE+S  G  +   +   KI+ F F P D GI R   E  +GG    NA++L  +  G  +                V  KV ++ EG  + +E  + GK
Sbjct:  121 DVIEALGFKCSDNPEEIARDIDEKGIGIIFAPYFHPVVGKAVKVRRELGIGTIFNMAGPMLNPANLSGQILGVYSEKVMRNMAEASLILKKDNILFYHGKDDGIDEISLSGKTIFAYLKNGKIDYFDFSPEDIGIKRYQKEEFKGGDAQENAKILEDIFKGVAKESHIDIVAVNSAFALWVLGKVKSVKEGFDMVKEHIMKGK 323          
The following BLAST results are available for this feature:
BLAST of CF835936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_CORA77.297e-2436.88Anthranilate phosphoribosyltransferase OS=Coryneba... [more]
TRPCD_ARCFU9.530e-2437.89Tryptophan biosynthesis protein trpCD OS=Archaeogl... [more]
TRPD_PYRAR1.245e-2334.97Anthranilate phosphoribosyltransferase OS=Pyrobacu... [more]
TRPD_PSYWF1.626e-2335.80Anthranilate phosphoribosyltransferase OS=Psychrob... [more]
TRPD_BACLD2.123e-2334.76Anthranilate phosphoribosyltransferase OS=Bacillus... [more]
TRPD_ALCBS2.773e-2339.16Anthranilate phosphoribosyltransferase OS=Alcanivo... [more]
TRPD_METTM3.621e-2332.76Anthranilate phosphoribosyltransferase OS=Methanob... [more]
TRPD_BUCBP3.621e-2332.92Anthranilate phosphoribosyltransferase OS=Buchnera... [more]
TRPD_STAS14.730e-2330.33Anthranilate phosphoribosyltransferase OS=Staphylo... [more]
TRPD_DICT64.730e-2333.00Anthranilate phosphoribosyltransferase OS=Dictyogl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835936 ID=CF835936; Name=CF835936; organism=Citrus sinensis; type=EST; length=742bp
CTTCTGCATGTCGATGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATT
GACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGG
TTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAG
TGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTGGGTCCTATG
TTGAATCCTGCATGTGTGCCATTCGCTGTGGTTGGTGTTTACAATGAAAA
CTTGGTACTCAAAATGGCCAATGCATTGCAACGATTTGGCCTGAAAAGAG
CATTGGTTGTTCACTCAGAGGGTTTGGATGAGATGAGTCCCCTTGGACCT
GGTCTGATCCTTGATGTCACCCAAGAAAAAATTGAGAGATTCTCATTTGA
TCCATTGGACTACGGCATTCCGCGCTGCACTTTAGAAAGCTTGCAAGGTG
GAGGCCCAGCATATAATGCAGAGGTCTTAAGGCGTGTACTGTCTGGAGAA
AGAGGGGCAATAGCTGATGCATTAATCCTAAATGCTGCAGCAGCGCTGTT
GGTCAGTTGCAAAGTGAACACCTTGGCTGAGGGTGTAGCCCTGGCACGTG
AAATTCAATTATCAGGGAAAGCTCTTAATACACTGGATTTATGGATAGAA
GTCTCAAAGCATTTGCTTGTGCATGAGTAATGGAGTTTTGAAGCCTAAGA
AAGACTTCATTGCAGTACCATGAATAACAGGTAAGTCAAAAG
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