CF835953

Overview
NameCF835953
Unique NameCF835953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK18_PONAB (Cell division protein kinase 18 OS=Pongo abelii GN=CDK18 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.234e-55
Identity = 102/188 (54.26%), Postives = 139/188 (73.94%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K F++Q+LRG+AYCH  ++LHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   RPLFPG +  +EL  IFR+LGTP E+TWPGVT+  +F++ +FP++  + L +    L+  GI LLS +L  +   R++A +AL H YFR +
Sbjct:  240 VKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELHLIFRLLGTPTEETWPGVTAFSEFRTYSFPRYLPQPLISHAPRLDTDGIQLLSSLLLYESKSRMSAEAALSHPYFRSL 426          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK18_MOUSE (Cell division protein kinase 18 OS=Mus musculus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.125e-55
Identity = 100/188 (53.19%), Postives = 140/188 (74.47%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K F++Q+LRG+AYCH  ++LHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   +PLFPG +  +EL  IFR+LGTP E++WPGVTS+ +F++  FP++  + L +    L+  GI+LLS +L  +   R++A +AL H YF+ +
Sbjct:  219 VKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGTPTEESWPGVTSISEFRAYNFPRYLPQPLLSHAPRLDTEGINLLSSLLLYESKSRMSAEAALNHPYFQSL 405          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK18_HUMAN (Cell division protein kinase 18 OS=Homo sapiens GN=CDK18 PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 6.125e-55
Identity = 102/188 (54.26%), Postives = 137/188 (72.87%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K F++Q+LRG+AYCH  ++LHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   RPLFPG +  +EL  IFR+LGTP E+TWPGVT+  +F++ +FP +  + L      L+  GI LLS +L  +   R++A +AL H YFR +
Sbjct:  240 VKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELHLIFRLLGTPTEETWPGVTAFSEFRTYSFPCYLPQPLINHAPRLDTDGIHLLSSLLLYESKSRMSAEAALSHSYFRSL 426          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CKD18_RAT (Cell division protein kinase 18 OS=Rattus norvegicus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.365e-54
Identity = 99/188 (52.66%), Postives = 140/188 (74.47%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K F++Q+LRG+AYCH  ++LHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   +PLFPG +  +EL  IFR+LGTP E++WPGVTS+ +F++  FP++  + L +    L+  GI+LL+ +L  +   R++A +AL H YF+ +
Sbjct:  219 VKIFMFQLLRGLAYCHRRKILHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGTPTEESWPGVTSISEFRAYNFPRYLPQPLLSHAPRLDTEGINLLTSLLLYESKSRMSAEAALSHPYFQSL 405          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: PHO85_CANGA (Negative regulator of the PHO system OS=Candida glabrata GN=PHO85 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.782e-54
Identity = 106/192 (55.21%), Postives = 140/192 (72.92%), Query Frame = -2
Query:  287 LIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL----PDFKSAFPKWPSKELGTVVRN-LEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 847
            L+K F +Q+L G+A+CH +++LHRDLKPQNLLI +R   LKL DFGLARAFGIPV TF+ EVVTLWYRAP++L+GSR YST +D+WS GCI AEM+  +PLFPG ++ ++L  IF  +GTPNE TWPGVTSL    P+F+   PK    EL   V+  L+   IDLL  +L ++P  R++A+ AL H +F +
Sbjct:  108 LVKYFQWQLLEGLAFCHENKILHRDLKPQNLLITKR-GQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDKMGTPNETTWPGVTSLPKYNPNFQQRLPKDLKAELQPYVKEPLDDNVIDLLHGLLQLNPDMRLSAKQALLHPWFSE 298          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK16_HUMAN (Cell division protein kinase 16 OS=Homo sapiens GN=CDK16 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.328e-54
Identity = 103/185 (55.68%), Postives = 137/185 (74.05%), Query Frame = -2
Query:  293 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYF 844
            +K FL+Q+LRG+AYCH  +VLHRDLKPQNLLI+ R   LKLADFGLARA  IP +T+++EVVTLWYR P+ILLGS  YST +D+W VGCIF EM   RPLFPG +  ++L  IFR+LGTP E+TWPG+ S  +FK+  +PK+ ++ L +    L+  G DLL+K+L  +   RI+A  A++H +F
Sbjct:  263 VKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINER-GELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFF 446          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK16_MOUSE (Cell division protein kinase 16 OS=Mus musculus GN=Cdk16 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.509e-53
Identity = 102/185 (55.14%), Postives = 136/185 (73.51%), Query Frame = -2
Query:  293 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYF 844
            +K FL+Q+LRG+AYCH  +VLHRDLKPQNLLI+ R   LKLADFGLARA  IP +T+++EVVTLWYR P+ILLGS  YST +D+W VGCIF EM   RPLFPG +  ++L  IFR+LGTP E+TWPG+ S  +F++  +PK+ ++ L +    L+  G DLL+K+L  +   RI+A  A +H +F
Sbjct:  263 VKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINER-GELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFRTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDARKHPFF 446          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: PHO85_YEAST (Cyclin-dependent protein kinase PHO85 OS=Saccharomyces cerevisiae GN=PHO85 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 3.361e-53
Identity = 102/201 (50.75%), Postives = 142/201 (70.65%), Query Frame = -2
Query:  287 NDPR-----LIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVR--NLEPAG---IDLLSKMLCMDPSRRITARSALEHEYFRD 859
            N PR     L+K F +Q+L+G+A+CH +++LHRDLKPQNLLI++R   LKL DFGLARAFGIPV TF+ EVVTLWYRAP++L+GSR YST +D+WS GCI AEM+  +PLFPG ++ ++L  IF ++GTPNE  WP VT LP +     + P ++L  V++    EP     +D L  +L ++P  R++A+ AL H +F +
Sbjct:  100 NTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKR-GQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAE 299          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CC2H1_TRYCO (Cell division control protein 2 homolog 1 OS=Trypanosoma congolense GN=CRK1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.488e-53
Identity = 105/204 (51.47%), Postives = 132/204 (64.71%), Query Frame = -2
Query:  278 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAF--PKWPSKELGT---------VVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEF 856
            DP  I+ F+  +L+G+ +CH   VLHRDLKP NLLI R    LKLADFGL RAFGIPV+ +THEVVTLWYR+P++LLGS  Y TPVD+WSVGCIFAEM    PLF G ++ D+L +IFR LGTP+   WP +   P+  +    P++    + T             L P GIDLL ++L  +P  R+TA  ALEH YF  VEF
Sbjct:  100 DPATIQEFMRSLLKGVRFCHERNVLHRDLKPPNLLISREKE-LKLADFGLGRAFGIPVKKYTHEVVTLWYRSPDVLLGSTQYGTPVDIWSVGCIFAEMAIGAPLFAGKNDADQLLRIFRFLGTPSSQVWPSMNLYPNSTNMLSKPEFQQNLIATCDEQFQTHPAYAKLGPQGIDLLRRLLRYEPGERLTAAQALEHPYF-SVEF 301          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK16_RAT (Cell division protein kinase 16 OS=Rattus norvegicus GN=Cdk16 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.779e-53
Identity = 102/185 (55.14%), Postives = 134/185 (72.43%), Query Frame = -2
Query:  293 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYF 844
            +K FL+Q+LRG+AYCH  +VLHRDLKPQNLLI+ R   LKLADFGLA A  IP +T+++EVVTLWYR P+ILLGS  YS  +D+W VGCIF EM   RPLFPG +  ++L  IFR+LGTP EDTWPG+ S  +F++  +PK+ ++ L      LE  G DLL+K+L  +   RI+A  A++H +F
Sbjct:  263 VKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINER-GELKLADFGLAYAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSGQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEDTWPGILSNEEFRTYNYPKYRAEALLRHAPRLECDGADLLTKLLQFEGRNRISAEDAMKHPFF 446          
The following BLAST results are available for this feature:
BLAST of CF835953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK18_PONAB1.234e-5554.26Cell division protein kinase 18 OS=Pongo abelii GN... [more]
CDK18_MOUSE6.125e-5553.19Cell division protein kinase 18 OS=Mus musculus GN... [more]
CDK18_HUMAN6.125e-5554.26Cell division protein kinase 18 OS=Homo sapiens GN... [more]
CKD18_RAT1.365e-5452.66Cell division protein kinase 18 OS=Rattus norvegic... [more]
PHO85_CANGA1.782e-5455.21Negative regulator of the PHO system OS=Candida gl... [more]
CDK16_HUMAN2.328e-5455.68Cell division protein kinase 16 OS=Homo sapiens GN... [more]
CDK16_MOUSE1.509e-5355.14Cell division protein kinase 16 OS=Mus musculus GN... [more]
PHO85_YEAST3.361e-5350.75Cyclin-dependent protein kinase PHO85 OS=Saccharom... [more]
CC2H1_TRYCO7.488e-5351.47Cell division control protein 2 homolog 1 OS=Trypa... [more]
CDK16_RAT9.779e-5355.14Cell division protein kinase 16 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835953 ID=CF835953; Name=CF835953; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTAATTCAATTTGGTGTATTACATATCAACTATTT
AAAAGAAAAACTGGCACAAACATTTATCCACAAGATCAAGAAAGCCGCGA
ATACACGATTACAAACTAGGCAAATCCAGAGATGACTGTAAAAAGCCATT
CCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTAAAGACAGTCGGCAAA
TTTCGCAAACAATCAAAACCGAAGGCTTCACAATAATGTCAACACTCTAA
TAGCATATACAACAGATATTAGGGTACAAATTCGACGTCCCTGAAGTATT
CATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTGCTTGGATCCATGCAG
AGCATTTTAGAAAGGAGATCAATGCCAGCTGGCTCAAGATTTCGAACAAC
AGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGGCAGATTTAAAGTCAG
GCAATGAAGTCACTCCAGGCCATGTGTCCTCATTAGGTGTTCCCAAGACT
CTGAAGATCTTGAATAACTCATCAATCTCAGAGTCTCCTGGAAACAATGG
CCGCTGGTTCACCATCTCAGCAAATATACATCCCACCGACCACACATCAA
CTGGAGTAGAGTAATGGCGAGATCCTAGTAATATTTCAGGTGCTCTGTAC
CACAATGTCACCACCTCATGTGTAAATGTCCTAACAGGAATACCAAAAGC
CCTGGCCAGTCCAAAATCTGCTAGCTTTAGTGCATTCGTACGACGATCTA
TTAGCAAATTTTGTGGTTTCAAATCTCGATGAAGAACCCGGTGAGAATGG
CAGTAGGCAATGCCACGTAGAATTTGATAAAGGAATGTTTTTATCAGACG
AGGATCATTAGCAAAATCTGGG
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