CF835954

Overview
NameCF835954
Unique NameCF835954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKD2_ARATH (Cyclin-dependent kinase D-2 OS=Arabidopsis thaliana GN=CDKD-2 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.784e-44
Identity = 95/181 (52.49%), Postives = 122/181 (67.40%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            +D+Y + + +GEGTYGVVYKA +  T +T+A+KKIRL  + EGV  TA+REI LLKE+ H +IV L D    +  L+LVFEY+  DL+  +     F + P  IK+++   L+G+AYCH   VLHRD+KP NLLI      LKLADFGLAR FG P   FTH+V   WYRAPE+L GSR Y
Sbjct:   10 VDRYLRRQILGEGTYGVVYKATDTKTGKTVAVKKIRLGNQKEGVNFTALREIKLLKELNHPHIVELIDAFPHDGSLHLVFEYMQTDLEAVIRDRNIFLS-PGDIKSYMLMTLKGLAYCHKKWVLHRDMKPNNLLIG-ENGLLKLADFGLARLFGSPNRRFTHQVFATWYRAPELLFGSRQY 188          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKD1_ARATH (Cyclin-dependent kinase D-1 OS=Arabidopsis thaliana GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43
Identity = 90/180 (50.00%), Postives = 123/180 (68.33%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            D+Y K E +G+GTYGVV+KA +    ET+A+KKIRL +E EGV  TA+REI LLKE++H +I+ L D    ++ L++VFE+++ DL+  +    +    P  +K++L  IL+G+ YCH   VLHRD+KP NLLI      LKLADFGLAR FG P   FTH+V   WYRAPE+L G++ Y
Sbjct:    9 DRYLKREVLGQGTYGVVFKATDTKNGETVAIKKIRLGKEKEGVNVTALREIKLLKELKHPHIIELIDAFPHKENLHIVFEFMETDLEAVIRD-RNLYLSPGDVKSYLQMILKGLEYCHGKWVLHRDMKPNNLLIG-PNGQLKLADFGLARIFGSPGRKFTHQVFARWYRAPELLFGAKQY 186          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKD3_ARATH (Cyclin-dependent kinase D-3 OS=Arabidopsis thaliana GN=CDKD-3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.395e-43
Identity = 90/180 (50.00%), Postives = 124/180 (68.89%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            D+Y K E +G+GTYGVV+KA +  T +T+A+KKIRL ++ EGV  TA+REI +LKE++H +I+ L D    ++ L+LVFE+++ DL+  +     F + P  IK++L    +G+AYCH   VLHRD+KP NLLI      LKLADFGLAR FG P   FTH+V   WYRAPE+L G++ Y
Sbjct:   10 DRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLS-PADIKSYLLMTFKGLAYCHDKWVLHRDMKPNNLLIG-VDGQLKLADFGLARIFGSPNRKFTHQVFARWYRAPELLFGAKQY 187          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.181e-42
Identity = 100/218 (45.87%), Postives = 133/218 (61.01%), Query Frame = 2
Query:  164 SPSVGSKDASFV*LLH*D*MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-----------------EKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP-VXTFTHEVVTLWYRAPEILLGSRHY 763
            SPS GS+            +D +EK+E+IGEGTYG VY A+   TNE +ALKKIR++ E EG P TAIREI +LK++ H N+++L+++V S                 +  +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR+F        T+ V+TLWYR PE+LLGS  Y
Sbjct:   14 SPSWGSRS-----------VDCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDLTGLADR-PGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGN-LKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLGSTRY 218          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDK10_DICDI (Probable cyclin-dependent kinase 10 OS=Dictyostelium discoideum GN=cdk10 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.849e-42
Identity = 94/185 (50.81%), Postives = 128/185 (69.19%), Query Frame = 2
Query:  230 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQED-EGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDP---RLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHYS 766
            +EK++ IGEGTYG+V K R+  T   +ALKK+++ Q+D +G+P T++REI +LKE++H NIV L +VV   +  K+YLVFEYL+ D+   +D+     N P     IK FL Q+LR + Y HSH ++HRDLK  NLL     N LKLADFGLAR FG P+ + T  +VTLWYR+PE+LLG + YS
Sbjct:    7 FEKLDSIGEGTYGIVSKGRDKETGRIVALKKVKIGQQDKDGIPLTSLREIQILKEIKHPNIVSLLEVVIGSTGDKIYLVFEYLEHDVASLIDNI----NKPFKLSEIKCFLLQLLRAVEYLHSHWIIHRDLKCSNLLYGNNGN-LKLADFGLARKFGYPIESITPCMVTLWYRSPELLLGCQKYS 186          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDC2_PETHY (Cell division control protein 2 homolog (Fragment) OS=Petunia hybrida GN=CDC2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.849e-42
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 2
Query:  344 EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQ 613
            EGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDS P+F+ DPRL+K FLYQILRGIAYCHSHRVLHRDLKPQ
Sbjct:    1 EGVPSTAIREISLLKEMQHANIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDPRLVKMFLYQILRGIAYCHSHRVLHRDLKPQ 90          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.347e-42
Identity = 101/218 (46.33%), Postives = 132/218 (60.55%), Query Frame = 2
Query:  164 SPSVGSKDASFV*LLH*D*MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--------------HSEK---KLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP-VXTFTHEVVTLWYRAPEILLGSRHY 763
            SPS GS+            +D +EK+E+IGEGTYG VY AR   T E +ALKKIR++ E EG P TAIREI +LK++ H N+++L+++V              H  K    +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR+F        T+ V+TLWYR PE+LLGS  Y
Sbjct:   14 SPSWGSRS-----------VDCFEKLEQIGEGTYGQVYMARETETQEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIHGNKYKGSIYMVFEYMDHDLTGLADR-PGMRFTVPQIKCYMKQLLTGLHYCHINQVLHRDIKGSNLLIDNEGN-LKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGSTKY 218          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 89/180 (49.44%), Postives = 120/180 (66.67%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            D+Y K E +GEGTYGVV+KA +  T  T+A+KKIRL +  EGV  TA+REI LLKE++  NI+ L D    +  L+LVFE+++ DL+  +    +    P   K+++  +L+G+A+CH   VLHRD+KP NLLI      LKLADFGLAR FG P   FTH+V   WYRAPE+L G++ Y
Sbjct:   17 DRYLKREVLGEGTYGVVFKADDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRD-RNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIG-ADGQLKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQY 194          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.083e-41
Identity = 89/180 (49.44%), Postives = 120/180 (66.67%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            D+Y K E +GEGTYGVV+KA +  T  T+A+KKIRL +  EGV  TA+REI LLKE++  NI+ L D    +  L+LVFE+++ DL+  +    +    P   K+++  +L+G+A+CH   VLHRD+KP NLLI      LKLADFGLAR FG P   FTH+V   WYRAPE+L G++ Y
Sbjct:   17 DRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRD-RNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIG-ADGQLKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQY 194          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDK10_RAT (Cell division protein kinase 10 OS=Rattus norvegicus GN=Cdk10 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.847e-41
Identity = 83/178 (46.63%), Postives = 130/178 (73.03%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGS 754
            ++EK+ +IGEGTYG+VY+AR+  T+E +ALKK+R+++E +G+P +++REI+LL  ++H NIV L++VV  +  + ++LV  Y + DL   +++ P   ++ + +K  L Q+LRG+ Y H   ++HRDLK  NLL+  +   +K ADFGLARA+G+PV   T +VVTLWYRAPE+LLG+
Sbjct:   36 EFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQ-VKCILLQVLRGLQYLHRSFIIHRDLKVSNLLMTDK-GCVKTADFGLARAYGVPVKPMTPKVVTLWYRAPELLLGT 211          
The following BLAST results are available for this feature:
BLAST of CF835954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKD2_ARATH1.784e-4452.49Cyclin-dependent kinase D-2 OS=Arabidopsis thalian... [more]
CDKD1_ARATH3.365e-4350.00Cyclin-dependent kinase D-1 OS=Arabidopsis thalian... [more]
CDKD3_ARATH4.395e-4350.00Cyclin-dependent kinase D-3 OS=Arabidopsis thalian... [more]
CDKC2_ORYSJ2.181e-4245.87Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDK10_DICDI2.849e-4250.81Probable cyclin-dependent kinase 10 OS=Dictyosteli... [more]
CDC2_PETHY2.849e-4291.11Cell division control protein 2 homolog (Fragment)... [more]
CDKC1_ORYSJ6.347e-4246.33Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSI8.289e-4249.44Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSJ1.083e-4149.44Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDK10_RAT1.847e-4146.63Cell division protein kinase 10 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835954 ID=CF835954; Name=CF835954; organism=Citrus sinensis; type=EST; length=768bp
CTCCAATCACCTCATTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATC
GTCCTCGCGTCTGTCACTGTATTATGCATTTGTATTTTTCTCTTTCGTAA
GCGGTTAATTTTCTCTTCATAACACACTGCCGCCACCTACGCCGTCGATT
CGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCGTGT
AGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAGATT
GGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAA
TGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTG
TGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCAT
GGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTA
TCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTT
GCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAA
ATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGA
TTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTANGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTAC
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