CF835956

Overview
NameCF835956
Unique NameCF835956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK15_HUMAN (Cell division protein kinase 15 OS=Homo sapiens GN=CDK15 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.621e-45
Identity = 94/180 (52.22%), Postives = 125/180 (69.44%), Query Frame = 2
Query:  230 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            Y  +EK+GEG+Y  VYK  + +  + +ALK I +  E EGVP TAIRE SLLK ++H NIV L D++H+++ L  VFEY+  DL ++M   P   + P  ++ F++Q+LRG+AY H   VLHRDLKPQNLLI      LKLADFGLARA  IP +T++ EVVTLWYR P+ LLG+  YS+
Sbjct:   52 YLNLEKLGEGSYATVYKGISRINGQLVALKVISMNAE-EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMHTDLAQYMSQHPGGLH-PHNVRLFMFQLLRGLAYIHHQHVLHRDLKPQNLLIS-HLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDALLGATEYSS 228          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKD1_ARATH (Cyclin-dependent kinase D-1 OS=Arabidopsis thaliana GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.829e-44
Identity = 91/180 (50.56%), Postives = 124/180 (68.89%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            D+Y K E +G+GTYGVV+KA +    ET+A+KKIRL +E EGV  TA+REI LLKE++H +I+ L D    ++ L++VFE+++ DL+  +    +    P  +K++L  IL+G+ YCH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y
Sbjct:    9 DRYLKREVLGQGTYGVVFKATDTKNGETVAIKKIRLGKEKEGVNVTALREIKLLKELKHPHIIELIDAFPHKENLHIVFEFMETDLEAVIRD-RNLYLSPGDVKSYLQMILKGLEYCHGKWVLHRDMKPNNLLIG-PNGQLKLADFGLARIFGSPGRKFTHQVFARWYRAPELLFGAKQY 186          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKD3_ARATH (Cyclin-dependent kinase D-3 OS=Arabidopsis thaliana GN=CDKD-3 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.919e-44
Identity = 91/180 (50.56%), Postives = 125/180 (69.44%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            D+Y K E +G+GTYGVV+KA +  T +T+A+KKIRL ++ EGV  TA+REI +LKE++H +I+ L D    ++ L+LVFE+++ DL+  +     F + P  IK++L    +G+AYCH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y
Sbjct:   10 DRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLS-PADIKSYLLMTFKGLAYCHDKWVLHRDMKPNNLLIG-VDGQLKLADFGLARIFGSPNRKFTHQVFARWYRAPELLFGAKQY 187          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK10_DICDI (Probable cyclin-dependent kinase 10 OS=Dictyostelium discoideum GN=cdk10 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.781e-43
Identity = 95/186 (51.08%), Postives = 129/186 (69.35%), Query Frame = 2
Query:  230 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQED-EGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDP---RLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +EK++ IGEGTYG+V K R+  T   +ALKK+++ Q+D +G+P T++REI +LKE++H NIV L +VV   +  K+YLVFEYL+ D+   +D+     N P     IK FL Q+LR + Y HSH ++HRDLK  NLL     N LKLADFGLAR FG P+ + T  +VTLWYR+PE+LLG + YST
Sbjct:    7 FEKLDSIGEGTYGIVSKGRDKETGRIVALKKVKIGQQDKDGIPLTSLREIQILKEIKHPNIVSLLEVVIGSTGDKIYLVFEYLEHDVASLIDNI----NKPFKLSEIKCFLLQLLRAVEYLHSHWIIHRDLKCSNLLYGNNGN-LKLADFGLARKFGYPIESITPCMVTLWYRSPELLLGCQKYST 187          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.288e-42
Identity = 90/182 (49.45%), Postives = 122/182 (67.03%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            D+Y K E +GEGTYGVV+KA +  T  T+A+KKIRL +  EGV  TA+REI LLKE++  NI+ L D    +  L+LVFE+++ DL+  +    +    P   K+++  +L+G+A+CH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y +
Sbjct:   17 DRYLKREVLGEGTYGVVFKADDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRD-RNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIG-ADGQLKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQYGS 196          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.682e-42
Identity = 90/182 (49.45%), Postives = 122/182 (67.03%), Query Frame = 2
Query:  224 DQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            D+Y K E +GEGTYGVV+KA +  T  T+A+KKIRL +  EGV  TA+REI LLKE++  NI+ L D    +  L+LVFE+++ DL+  +    +    P   K+++  +L+G+A+CH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y +
Sbjct:   17 DRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRD-RNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIG-ADGQLKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQYGS 196          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.682e-42
Identity = 100/218 (45.87%), Postives = 133/218 (61.01%), Query Frame = 2
Query:  164 SPSVGSKDASFV*LLH*D*MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-----------------EKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR-TFTHEVVTLWYRAPEILLGSRHY 763
            SPS GS+            +D +EK+E+IGEGTYG VY A+   TNE +ALKKIR++ E EG P TAIREI +LK++ H N+++L+++V S                 +  +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR+F        T+ V+TLWYR PE+LLGS  Y
Sbjct:   14 SPSWGSRS-----------VDCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDLTGLADR-PGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGN-LKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLGSTRY 218          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDC2_PETHY (Cell division control protein 2 homolog (Fragment) OS=Petunia hybrida GN=CDC2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.869e-42
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 2
Query:  344 EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQ 613
            EGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDS P+F+ DPRL+K FLYQILRGIAYCHSHRVLHRDLKPQ
Sbjct:    1 EGVPSTAIREISLLKEMQHANIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDPRLVKMFLYQILRGIAYCHSHRVLHRDLKPQ 90          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKG2_ORYSJ (Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 86/185 (46.49%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +D++E++ KI EGTYGVVY+AR+  T E +ALKK+++E+E EG P T++REI++L    H +IV +++VV   S   +++V EY++ DLK  M++     +    +K  + Q+L G+ Y H + VLHRDLK  NLL++ R   LK+ DFGL+R +G P++ +T  VVTLWYRAPE+LLG++ YST
Sbjct:  362 VDEFERLNKINEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGVMEAMKQPYSQSE-VKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNR-GELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGTKEYST 544          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKG2_ORYSI (Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica GN=CDKG-2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 86/185 (46.49%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +D++E++ KI EGTYGVVY+AR+  T E +ALKK+++E+E EG P T++REI++L    H +IV +++VV   S   +++V EY++ DLK  M++     +    +K  + Q+L G+ Y H + VLHRDLK  NLL++ R   LK+ DFGL+R +G P++ +T  VVTLWYRAPE+LLG++ YST
Sbjct:  362 VDEFERLNKINEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGVMEAMKQPYSQSE-VKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNR-GELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGTKEYST 544          
The following BLAST results are available for this feature:
BLAST of CF835956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK15_HUMAN3.621e-4552.22Cell division protein kinase 15 OS=Homo sapiens GN... [more]
CDKD1_ARATH6.829e-4450.56Cyclin-dependent kinase D-1 OS=Arabidopsis thalian... [more]
CDKD3_ARATH8.919e-4450.56Cyclin-dependent kinase D-3 OS=Arabidopsis thalian... [more]
CDK10_DICDI5.781e-4351.08Probable cyclin-dependent kinase 10 OS=Dictyosteli... [more]
CDKD1_ORYSI1.288e-4249.45Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSJ1.682e-4249.45Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKC2_ORYSJ1.682e-4245.87Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDC2_PETHY2.869e-4291.11Cell division control protein 2 homolog (Fragment)... [more]
CDKG2_ORYSJ3.747e-4246.49Cyclin-dependent kinase G-2 OS=Oryza sativa subsp.... [more]
CDKG2_ORYSI3.747e-4246.49Cyclin-dependent kinase G-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835956 ID=CF835956; Name=CF835956; organism=Citrus sinensis; type=EST; length=769bp
CTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATC
GTCCTCGCGTCTGTCACTGTATTATGCATTTGTATTTTTCTCTTTCGTAA
GCGGTTAATTTTCTCTTCATAACACACTGCCGCCACCTACGCCGTCGATT
CGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCGTGT
AGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAGATT
GGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAA
TGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTG
TGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCAT
GGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTA
TCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTT
GCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAA
ATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGA
TTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTACT
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