CF835956

Overview
NameCF835956
Unique NameCF835956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.894e-42
Identity = 101/218 (46.33%), Postives = 132/218 (60.55%), Query Frame = 2
Query:  164 SPSVGSKDASFV*LLH*D*MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--------------HSEK---KLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR-TFTHEVVTLWYRAPEILLGSRHY 763
            SPS GS+            +D +EK+E+IGEGTYG VY AR   T E +ALKKIR++ E EG P TAIREI +LK++ H N+++L+++V              H  K    +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR+F        T+ V+TLWYR PE+LLGS  Y
Sbjct:   14 SPSWGSRS-----------VDCFEKLEQIGEGTYGQVYMARETETQEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIHGNKYKGSIYMVFEYMDHDLTGLADR-PGMRFTVPQIKCYMKQLLTGLHYCHINQVLHRDIKGSNLLIDNEGN-LKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGSTKY 218          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK10_RAT (Cell division protein kinase 10 OS=Rattus norvegicus GN=Cdk10 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.894e-42
Identity = 84/183 (45.90%), Postives = 133/183 (72.68%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            ++EK+ +IGEGTYG+VY+AR+  T+E +ALKK+R+++E +G+P +++REI+LL  ++H NIV L++VV  +  + ++LV  Y + DL   +++ P   ++ + +K  L Q+LRG+ Y H   ++HRDLK  NLL+  +   +K ADFGLARA+G+PV+  T +VVTLWYRAPE+LLG+   +T
Sbjct:   36 EFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQ-VKCILLQVLRGLQYLHRSFIIHRDLKVSNLLMTDK-GCVKTADFGLARAYGVPVKPMTPKVVTLWYRAPELLLGTTTQTT 216          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK10_MOUSE (Cell division protein kinase 10 OS=Mus musculus GN=Cdk10 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.894e-42
Identity = 83/183 (45.36%), Postives = 134/183 (73.22%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            ++EK+ +IGEGTYG+VY+AR+  T+E +ALKK+R+++E +G+P +++REI+LL  ++H NIV L++VV  +  + ++LV  Y + DL   +++ P   ++ + +K  + Q+LRG+ Y H + ++HRDLK  NLL+  +   +K ADFGLARA+G+PV+  T +VVTLWYRAPE+LLG+   +T
Sbjct:   38 EFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQ-VKCIMLQVLRGLQYLHRNFIIHRDLKVSNLLMTDK-GCVKTADFGLARAYGVPVKPMTPKVVTLWYRAPELLLGTTTQTT 218          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK10_BOVIN (Cell division protein kinase 10 OS=Bos taurus GN=CDK10 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.894e-42
Identity = 85/183 (46.45%), Postives = 134/183 (73.22%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            ++EK+ +IGEGTYG+VY+AR+  T+E +ALKK+R+++E +GVP +++REI+LL  ++H NIV L++VV  +  + ++LV  Y + DL   +++ P   ++ + +K  + Q+LRG+ Y H + ++HRDLK  NLL+  +   +K ADFGLARA+GIPV+  T +VVTLWYRAPE+LLG+   +T
Sbjct:   36 EFEKLNRIGEGTYGIVYRARDTHTDEIVALKKVRMDKEKDGVPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQ-VKCIVLQVLRGLQYLHRNFIIHRDLKVSNLLMTDK-GCVKTADFGLARAYGIPVKPMTPKVVTLWYRAPELLLGTTTQTT 216          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK10_HUMAN (Cell division protein kinase 10 OS=Homo sapiens GN=CDK10 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.392e-42
Identity = 83/183 (45.36%), Postives = 134/183 (73.22%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            ++EK+ +IGEGTYG+VY+AR+  T+E +ALKK+R+++E +G+P +++REI+LL  ++H NIV L++VV  +  + ++LV  Y + DL   +++ P   ++ + +K  + Q+LRG+ Y H + ++HRDLK  NLL+  +   +K ADFGLARA+G+PV+  T +VVTLWYRAPE+LLG+   +T
Sbjct:   38 EFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQ-VKCIVLQVLRGLQYLHRNFIIHRDLKVSNLLMTDK-GCVKTADFGLARAYGVPVKPMTPKVVTLWYRAPELLLGTTTQTT 218          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKC1_ARATH (Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 92/198 (46.46%), Postives = 126/198 (63.64%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKK----------------LYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP-VRTFTHEVVTLWYRAPEILLGSRHY 763
            +D +EK+E+IGEGTYG VY A+   T E +ALKKIR++ E EG P TAIREI +LK++ H N+++L+++V S  +                +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR++        T+ V+TLWYR PE+LLG+  Y
Sbjct:   23 VDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIQLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLADR-PGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGN-LKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKY 218          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKC2_ARATH (Cyclin-dependent kinase C-2 OS=Arabidopsis thaliana GN=CDKC-2 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.230e-41
Identity = 92/198 (46.46%), Postives = 125/198 (63.13%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKK----------------LYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP-VRTFTHEVVTLWYRAPEILLGSRHY 763
            +D +EK+E+IGEGTYG VY A+   T E +ALKKIR++ E EG P TAIREI +LK++ H N++ L+++V S  +                +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR++        T+ V+TLWYR PE+LLG+  Y
Sbjct:   23 VDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIHLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLADR-PGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGN-LKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKY 218          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.230e-41
Identity = 85/182 (46.70%), Postives = 120/182 (65.93%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDE---GVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            +YEK++ +GEG +  VYKAR+  TN+ +A+KKI+L    E   G+  TA+REI LL+E+ H NI+ L D    +  + LVF++++ DL+  +         P  IK ++   L+G+ Y H H +LHRDLKP NLL+D     LKLADFGLA++FG P R +TH+VVT WYRAPE+L G+R Y
Sbjct:   11 RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDEN-GVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMY 190          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.230e-41
Identity = 85/182 (46.70%), Postives = 120/182 (65.93%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDE---GVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            +YEK++ +GEG +  VYKAR+  TN+ +A+KKI+L    E   G+  TA+REI LL+E+ H NI+ L D    +  + LVF++++ DL+  +         P  IK ++   L+G+ Y H H +LHRDLKP NLL+D     LKLADFGLA++FG P R +TH+VVT WYRAPE+L G+R Y
Sbjct:   11 RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDEN-GVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMY 190          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSJ (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. japonica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.205e-40
Identity = 81/185 (43.78%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +D++E++  I EGTYGVV++ R+  T E +ALKK+++E+E EG P T++RE+++L    H +IV +++VV   +++ +++V EY++ DLK  M++     +    +K  + Q+L G+ Y H + VLHRDLK  NLL++ R   LK+ DFGL+R +G P++ +T  VVTLWYRAPE+LLG++ YST
Sbjct:  346 VDEFERLNTINEGTYGVVFRVRDKRTGEIVALKKVKMEKEREGFPLTSLREMNILLSFHHPSIVEVKEVVVGSNDRDIFMVMEYMEHDLKGVMETMKQPYSQSE-VKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNR-GELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGAKDYST 528          
The following BLAST results are available for this feature:
BLAST of CF835956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKC1_ORYSJ4.894e-4246.33Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDK10_RAT4.894e-4245.90Cell division protein kinase 10 OS=Rattus norvegic... [more]
CDK10_MOUSE4.894e-4245.36Cell division protein kinase 10 OS=Mus musculus GN... [more]
CDK10_BOVIN4.894e-4246.45Cell division protein kinase 10 OS=Bos taurus GN=C... [more]
CDK10_HUMAN6.392e-4245.36Cell division protein kinase 10 OS=Homo sapiens GN... [more]
CDKC1_ARATH7.067e-4146.46Cyclin-dependent kinase C-1 OS=Arabidopsis thalian... [more]
CDKC2_ARATH9.230e-4146.46Cyclin-dependent kinase C-2 OS=Arabidopsis thalian... [more]
CDK7_MOUSE9.230e-4146.70Cell division protein kinase 7 OS=Mus musculus GN=... [more]
CDK7_HUMAN9.230e-4146.70Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
CDKG1_ORYSJ1.205e-4043.78Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835956 ID=CF835956; Name=CF835956; organism=Citrus sinensis; type=EST; length=769bp
CTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATC
GTCCTCGCGTCTGTCACTGTATTATGCATTTGTATTTTTCTCTTTCGTAA
GCGGTTAATTTTCTCTTCATAACACACTGCCGCCACCTACGCCGTCGATT
CGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCGTGT
AGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAGATT
GGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAA
TGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTG
TGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCAT
GGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTA
TCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTT
GCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAA
ATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGA
TTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTACT
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