CF835956

Overview
NameCF835956
Unique NameCF835956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSI (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. indica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.205e-40
Identity = 81/185 (43.78%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +D++E++  I EGTYGVV++ R+  T E +ALKK+++E+E EG P T++RE+++L    H +IV +++VV   +++ +++V EY++ DLK  M++     +    +K  + Q+L G+ Y H + VLHRDLK  NLL++ R   LK+ DFGL+R +G P++ +T  VVTLWYRAPE+LLG++ YST
Sbjct:  346 VDEFERLNTINEGTYGVVFRVRDKRTGEIVALKKVKMEKEREGFPLTSLREMNILLSFHHPSIVEVKEVVVGSNDRDIFMVMEYMEHDLKGVMETMKQPYSQSE-VKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNR-GELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGAKDYST 528          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CD11B_HUMAN (Cell division protein kinase 11B OS=Homo sapiens GN=CDK11B PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.205e-40
Identity = 82/185 (44.32%), Postives = 131/185 (70.81%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +++++ + +I EGTYGVVY+A++  T+E +ALK++++E+E EG P T++REI+ + + QH NIV ++++V   +  K+Y+V  Y++ DLK  M++       P  +KT + Q+LRG+ + H + +LHRDLK  NLL+      LK+ DFGLAR +G P++ +T  VVTLWYRAPE+LLG++ YST
Sbjct:  435 VEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQ-PFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLS-HAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYST 617          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKC3_ORYSJ (Cyclin-dependent kinase C-3 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.581e-40
Identity = 88/197 (44.67%), Postives = 125/197 (63.45%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS---------------EKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS 766
            +D + ++ KIGEGTYG V++A + +T E  ALKKI+L+   EG P   +REI LLK++ H NI+RL+++V S                  +Y+VFEY+D DLKK +       + P  +K ++ Q+L+G+ YCH + VLHRD+K  NLLI      LKLADFGLAR F     +FT+ V+TLWYR PE+LLG+ +Y+
Sbjct:   24 VDCFRRIRKIGEGTYGEVFEAMDIITGERAALKKIKLDDGKEGFPRQILREIKLLKKLDHENIIRLKEIVVSPGTAHGAGGSDDYMYRGDIYMVFEYMDHDLKKVLHH-----STPSQVKYYMEQLLKGLHYCHVNNVLHRDIKGANLLISGGGKLLKLADFGLARPF-TRDGSFTNHVITLWYRPPELLLGATNYA 214          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK11_RAT (Cell division protein kinase 11 OS=Rattus norvegicus GN=Cdk11 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.581e-40
Identity = 82/185 (44.32%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +++++ + +I EGTYGVVY+A++  T+E +ALK++++E+E EG P T+IREI+ + + QH NIV ++++V   +  K+Y+V  Y++ DLK  M++       P  +KT + Q+L G+ + H + +LHRDLK  NLL+      LK+ DFGLAR +G P++ +T  VVTLWYRAPE+LLG++ YST
Sbjct:   76 VEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPLTSIREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQ-PFLPGEVKTLMIQLLSGVKHLHDNWILHRDLKTSNLLL-THAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYST 258          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK11_MOUSE (Cell division protein kinase 11 OS=Mus musculus GN=Cdk11 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.983e-40
Identity = 81/185 (43.78%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +++++ + +I EGTYGVVY+A++  T+E +ALK++++E+E EG P T++REI+ + + QH NIV ++++V   +  K+Y+V  Y++ DLK  M++       P  +KT + Q+L G+ + H + +LHRDLK  NLL+      LK+ DFGLAR +G P++ +T  VVTLWYRAPE+LLG++ YST
Sbjct:  424 VEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQ-PFLPGEVKTLMIQLLSGVKHLHDNWILHRDLKTSNLLLS-HAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYST 606          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CD11A_HUMAN (Cell division protein kinase 11A OS=Homo sapiens GN=CDK11A PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 5.983e-40
Identity = 81/185 (43.78%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +++++ + +I EGTYGVVY+A++  T+E +ALK++++E+E EG P T++REI+ + + QH NIV ++++V   +  K+Y+V  Y++ DLK  M++       P  +KT + Q+LRG+ + H + +LHRDLK  NLL+      LK+ DFGLAR +G P++ +T  VVT WYRAPE+LLG++ YST
Sbjct:  420 VEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQ-PFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLS-HAGILKVGDFGLAREYGSPLKAYTPVVVTQWYRAPELLLGAKEYST 602          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: Y7597_DROME (Cell division cycle 2-like protein kinase CG7597 OS=Drosophila melanogaster GN=CG7597 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.273e-39
Identity = 88/194 (45.36%), Postives = 124/194 (63.92%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDS-CPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP--VRTFTHEVVTLWYRAPEILLGSRHY 763
            +D +E + +IGEGTYG VYKAR+  TN+ +ALKK+RLE E EG P TA+REI +L+++ H NIV L ++V  ++            YLVFEY+D DL   ++S   DF  +     + + Q+L G+ YCH    LHRD+K  N+L++ R   +KLADFGLAR +      R +T++V+TLWYR PE+LLG   Y
Sbjct:  801 VDVFEMIAQIGEGTYGQVYKARDHHTNDMVALKKVRLEHEKEGFPITAVREIKILRQLNHRNIVNLHEIVTDKQDAVEFRKDKGSFYLVFEYMDHDLMGLLESGMVDFNEENN--ASIMKQLLDGLNYCHKKNFLHRDIKCSNILMNNR-GKVKLADFGLARLYNADDRERPYTNKVITLWYRPPELLLGEERY 991          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK13_MOUSE (Cell division protein kinase 13 OS=Mus musculus GN=Cdk13 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.878e-39
Identity = 85/193 (44.04%), Postives = 127/193 (65.80%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-PVRTFTHEVVTLWYRAPEILLGSRHYS 766
            +D+++ +  IGEGTYG VYKAR+  T E +ALKK+RL+ E EG P TAIREI +L+++ H +I+ ++++V  ++            YLVFEY+D DL   ++S     N+   IK+F+ Q++ G+ YCH    LHRD+K  N+L++ R   +KLADFGLAR +     R +T++V+TLWYR PE+LLG   Y+
Sbjct:  702 VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENH-IKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNR-GQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYT 892          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK13_HUMAN (Cell division protein kinase 13 OS=Homo sapiens GN=CDK13 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.878e-39
Identity = 85/193 (44.04%), Postives = 127/193 (65.80%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-PVRTFTHEVVTLWYRAPEILLGSRHYS 766
            +D+++ +  IGEGTYG VYKAR+  T E +ALKK+RL+ E EG P TAIREI +L+++ H +I+ ++++V  ++            YLVFEY+D DL   ++S     N+   IK+F+ Q++ G+ YCH    LHRD+K  N+L++ R   +KLADFGLAR +     R +T++V+TLWYR PE+LLG   Y+
Sbjct:  702 VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENH-IKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNR-GQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYT 892          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: KP58_DROME (Serine/threonine-protein kinase PITSLRE OS=Drosophila melanogaster GN=Pitslre PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.065e-39
Identity = 82/187 (43.85%), Postives = 130/187 (69.52%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFAND--PRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +++++ + +I EGTYGVVY+A++  TNE +ALK++++E+E EG P T++REI+ L + QH NIV ++++V   +  K+++V +Y++ DLK  M++  +      P  +K    Q+LR +A+ H + +LHRDLK  NLL+  +   LK+ DFGLAR +G P++ +T  VVTLWYRAPE+LL S  YST
Sbjct:  555 VEEFQCLNRIEEGTYGVVYRAKDKRTNEIVALKRLKMEKEKEGFPITSLREINTLLKGQHPNIVTVREIVVGSNMDKIFIVMDYVEHDLKSLMETMKNRKQSFFPGEVKCLTQQLLRAVAHLHDNWILHRDLKTSNLLLSHK-GILKVGDFGLAREYGSPIKKYTSLVVTLWYRAPELLLCSPVYST 740          
The following BLAST results are available for this feature:
BLAST of CF835956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKG1_ORYSI1.205e-4043.78Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
CD11B_HUMAN1.205e-4044.32Cell division protein kinase 11B OS=Homo sapiens G... [more]
CDKC3_ORYSJ4.581e-4044.67Cyclin-dependent kinase C-3 OS=Oryza sativa subsp.... [more]
CDK11_RAT4.581e-4044.32Cell division protein kinase 11 OS=Rattus norvegic... [more]
CDK11_MOUSE5.983e-4043.78Cell division protein kinase 11 OS=Mus musculus GN... [more]
CD11A_HUMAN5.983e-4043.78Cell division protein kinase 11A OS=Homo sapiens G... [more]
Y7597_DROME2.273e-3945.36Cell division cycle 2-like protein kinase CG7597 O... [more]
CDK13_MOUSE3.878e-3944.04Cell division protein kinase 13 OS=Mus musculus GN... [more]
CDK13_HUMAN3.878e-3944.04Cell division protein kinase 13 OS=Homo sapiens GN... [more]
KP58_DROME5.065e-3943.85Serine/threonine-protein kinase PITSLRE OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835956 ID=CF835956; Name=CF835956; organism=Citrus sinensis; type=EST; length=769bp
CTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATC
GTCCTCGCGTCTGTCACTGTATTATGCATTTGTATTTTTCTCTTTCGTAA
GCGGTTAATTTTCTCTTCATAACACACTGCCGCCACCTACGCCGTCGATT
CGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCGTGT
AGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAGATT
GGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAA
TGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTG
TGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCAT
GGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTA
TCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTT
GCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAA
ATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGA
TTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTACT
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