CF835956

Overview
NameCF835956
Unique NameCF835956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: YP62_CAEEL (Putative serine/threonine-protein kinase B0495.2 OS=Caenorhabditis elegans GN=B0495.2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.925e-38
Identity = 86/190 (45.26%), Postives = 130/190 (68.42%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREIS-LLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLI----KTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            +D+YE V ++ EGT+GVVY+ ++  T+E +ALK++++E+E EG P TA+REI+ LLK   H NIV +++++   +  K+Y+  E+++ D+K  +D+      + R      KT L Q+L GI + H   +LHRDLK  NLL+  +   LK+ADFGLAR +G P++ FT  VVTLWYR+PE+LLG+R YST
Sbjct:  353 IDEYECVNRVDEGTFGVVYRGKDKRTDEIVALKRLKMEKEKEGFPITALREINMLLKAGNHPNIVNVKEILLGSNMDKIYMAMEFVEHDMKSLLDTMS--RRNKRFSIGEQKTLLQQLLSGIEHMHKLWILHRDLKTSNLLMSHK-GILKIADFGLAREYGDPLKKFTSIVVTLWYRSPELLLGTRLYST 539          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CTK1_SCHPO (CTD kinase subunit alpha OS=Schizosaccharomyces pombe GN=lsk1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.925e-38
Identity = 87/183 (47.54%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  230 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLK-KHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRT--FTHEVVTLWYRAPEILLGSRHYST 769
            YEK+++IGEGTYG VYKA N VT + +ALK+IRLEQE +G P T +RE+ +L+ ++H NIVRL +++  +  +Y+VFEY+D DL    ++S   F   P  IK    QI   +AY H   VLHRD+K  N+L++   + LK ADFGLAR F    ++  +T+ V+TLW+R PE+LLG   Y T
Sbjct:  277 YEKIDQIGEGTYGKVYKAINTVTGDLVALKRIRLEQEKDGFPITTVREVKILQRLRHKNIVRLLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFT--PGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGD-LKFADFGLAR-FNTSSKSANYTNRVITLWFRPPELLLGETAYDT 455          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK6_HUMAN (Cell division protein kinase 6 OS=Homo sapiens GN=CDK6 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.925e-38
Identity = 87/187 (46.52%), Postives = 124/187 (66.31%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTN-ETIALKKIRLEQEDEGVPSTAIREISLLKEMQ---HGNIVRLQDV-----VHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRH 760
            QYE V +IGEG YG V+KAR+       +ALK++R++  +EG+P + IRE+++L+ ++   H N+VRL DV        E KL LVFE++D DL  ++D  P+       IK  ++Q+LRG+ + HSHRV+HRDLKPQN+L+   +  +KLADFGLAR +   +   T  VVTLWYRAPE+LL S +
Sbjct:   12 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILV-TSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQSSY 196          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKL4_MOUSE (Cyclin-dependent kinase-like 4 OS=Mus musculus GN=Cdkl4 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.283e-38
Identity = 78/183 (42.62%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYST 769
            M++YEK+ KIGEG+YGVV+K RN  + + +A+KK    ++D  V   A+REI +LK+++H N+V L +V   ++K++LVFEY D  L   ++  P+  +D  +IK+ L+Q L+ + +CH H  +HRD+KP+N+LI ++   +K+ DFG AR   IP   +T  V T WYRAPE+L+G   Y +
Sbjct:    1 MEKYEKLAKIGEGSYGVVFKCRNKSSGQVVAIKKFVESEDDRVVRKIALREIRMLKQLKHPNLVNLIEVFRRKRKMHLVFEYCDHTLLNELERNPNGVSD-GVIKSVLWQTLQALNFCHKHNCIHRDVKPENILITKQ-GMIKICDFGFARIL-IPGDAYTDYVATRWYRAPELLVGDTKYGS 180          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK12_RAT (Cell division protein kinase 12 OS=Rattus norvegicus GN=Cdk12 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.283e-38
Identity = 84/194 (43.30%), Postives = 128/194 (65.98%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDS-CPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-PVRTFTHEVVTLWYRAPEILLGSRHYS 766
            +D+++ +  IGEGTYG VYKA++  T E +ALKK+RL+ E EG P TAIREI +L+++ H ++V ++++V  ++            YLVFEY+D DL   ++S    F+ D   IK+F+ Q++ G+ YCH    LHRD+K  N+L++  +  +KLADFGLAR +     R +T++V+TLWYR PE+LLG   Y+
Sbjct:  720 VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVHQSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDH--IKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLN-NSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYT 910          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDK12_MOUSE (Cell division protein kinase 12 OS=Mus musculus GN=Cdk12 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.283e-38
Identity = 84/194 (43.30%), Postives = 128/194 (65.98%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDS-CPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-PVRTFTHEVVTLWYRAPEILLGSRHYS 766
            +D+++ +  IGEGTYG VYKA++  T E +ALKK+RL+ E EG P TAIREI +L+++ H ++V ++++V  ++            YLVFEY+D DL   ++S    F+ D   IK+F+ Q++ G+ YCH    LHRD+K  N+L++  +  +KLADFGLAR +     R +T++V+TLWYR PE+LLG   Y+
Sbjct:  720 VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVHQSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDH--IKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLN-NSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYT 910          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: Y823_ENCCU (Probable cell division protein kinase ECU08_0230 OS=Encephalitozoon cuniculi GN=ECU08_0230 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.313e-38
Identity = 83/181 (45.86%), Postives = 120/181 (66.30%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            M +Y     IG GTYG VY+A +  T E +ALK+IRL  E EG+P TA+REIS+LK++ H NI+ L  ++H++  L +VF ++D +LKK++       N  + I   + Q++ G+ Y H   V+HRDLKPQN+L+      LK+ADFGL+R+  I V  ++ EVVTLWYR+PE+L+GS  Y
Sbjct:    1 MTRYILGALIGSGTYGEVYEAIDTETKEKVALKRIRLN-EKEGMPGTALREISILKKLSHRNIISLVSIIHTDALLTMVFPFIDYELKKYIG-----MNTGKNIMELVNQLICGVHYLHRMNVVHRDLKPQNILV-TSDGVLKIADFGLSRSLEIRVPPYSSEVVTLWYRSPELLMGSTSY 174          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKL2_RAT (Cyclin-dependent kinase-like 2 OS=Rattus norvegicus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.313e-38
Identity = 74/181 (40.88%), Postives = 118/181 (65.19%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            M++YE +  +GEG+YG+V K RN  +   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   +   P+   D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLKLFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKY 179          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKL2_MOUSE (Cyclin-dependent kinase-like 2 OS=Mus musculus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.313e-38
Identity = 74/181 (40.88%), Postives = 118/181 (65.19%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            M++YE +  +GEG+YG+V K RN  +   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   +   P+   D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLKLFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKY 179          
BLAST of CF835956 vs. ExPASy Swiss-Prot
Match: CDKL1_DANRE (Cyclin-dependent kinase-like 1 OS=Danio rerio GN=cdkl1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.551e-38
Identity = 75/181 (41.44%), Postives = 116/181 (64.09%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHY 763
            M++YEK+ KIGEG+YGVV+K RN  T + +A+KK    ++D  +   A+REI +LK+++H N+V L +V   ++KL+LVFEY D  +   +D  P    +  ++K+ ++Q L+ + +CH    +HRD+KP+N+LI +    +KL DFG AR    P   +T  V T WYRAPE+L+G   Y
Sbjct:    1 MEKYEKISKIGEGSYGVVFKCRNKDTGQIVAIKKFVESEDDPIIKKIALREIRMLKQLKHPNLVNLMEVFRRKRKLHLVFEYCDHTVLNELDRYPRGVPE-HMVKSIIWQTLQAVNFCHKQNCIHRDVKPENILITKH-QVIKLCDFGFARILTGPCDYYTDCVATRWYRAPELLVGDTQY 179          
The following BLAST results are available for this feature:
BLAST of CF835956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YP62_CAEEL1.925e-3845.26Putative serine/threonine-protein kinase B0495.2 O... [more]
CTK1_SCHPO1.925e-3847.54CTD kinase subunit alpha OS=Schizosaccharomyces po... [more]
CDK6_HUMAN1.925e-3846.52Cell division protein kinase 6 OS=Homo sapiens GN=... [more]
CDKL4_MOUSE3.283e-3842.62Cyclin-dependent kinase-like 4 OS=Mus musculus GN=... [more]
CDK12_RAT3.283e-3843.30Cell division protein kinase 12 OS=Rattus norvegic... [more]
CDK12_MOUSE3.283e-3843.30Cell division protein kinase 12 OS=Mus musculus GN... [more]
Y823_ENCCU7.313e-3845.86Probable cell division protein kinase ECU08_0230 O... [more]
CDKL2_RAT7.313e-3840.88Cyclin-dependent kinase-like 2 OS=Rattus norvegicu... [more]
CDKL2_MOUSE7.313e-3840.88Cyclin-dependent kinase-like 2 OS=Mus musculus GN=... [more]
CDKL1_DANRE9.551e-3841.44Cyclin-dependent kinase-like 1 OS=Danio rerio GN=c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835956 ID=CF835956; Name=CF835956; organism=Citrus sinensis; type=EST; length=769bp
CTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATC
GTCCTCGCGTCTGTCACTGTATTATGCATTTGTATTTTTCTCTTTCGTAA
GCGGTTAATTTTCTCTTCATAACACACTGCCGCCACCTACGCCGTCGATT
CGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCGTGT
AGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAGATT
GGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAA
TGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTG
TGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCAT
GGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTA
TCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTT
GCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAA
ATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGA
TTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTACT
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