CF835963

Overview
NameCF835963
Unique NameCF835963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835963 vs. ExPASy Swiss-Prot
Match: IPRT1_CATRO (Probable intracellular pathogenesis-related protein T1 OS=Catharanthus roseus GN=PCKR3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 43/152 (28.29%), Postives = 82/152 (53.95%), Query Frame = -3
Query:  303 GKLEVELEVKSS---ADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGEGSLVKWACEFE-KASDDVPDPSVI--KDFALKNFQEVDDYI 737
            G +  ++E+KSS   A  F   + D  TL  KA  +  KS+++L+GDG A G+++L+ + +G P+  V    +E +D+ N    Y ++DG+ L+   ++   ++ + P G GS+ K    F  KA  ++ +  +   K+ A +  + V+ Y+
Sbjct:    2 GVISYDMEIKSSLSAAKLFKAFVLDVGTLINKALPNVIKSVEILQGDGGA-GTIKLVHFGEGGPVPSVK-HHVEELDKDNMSYKYSIVDGEALMPGLQSISYVIKIEPSGHGSVCKHNTTFHFKAGSNINEDEIKAGKERAAEMIKAVEAYV 151          
BLAST of CF835963 vs. ExPASy Swiss-Prot
Match: ML329_ARATH (MLP-like protein 329 OS=Arabidopsis thaliana GN=MLP329 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 42/147 (28.57%), Postives = 77/147 (52.38%), Query Frame = -3
Query:  303 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY-ADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLV-KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYI 737
            G    E+ +K SADK +   RD   LFP A  H  + + V +G+  +  ++++  Y  DG P  +V  E+ E +D+ N V+T++ ++G +++  K +  I   + K    +V K    +EK +DD P+PS    F      ++D+++
Sbjct:    5 GTYVTEVPLKGSADKHYKRWRDENHLFPDAIGHHIQGVTVHDGEWDSHEAIKIWNYTCDGKP--EVFKERKE-IDDENMVITFRGLEGHVMEQLKVYDLIYQFSQKSPDDIVCKITMIWEKRTDDSPEPSNYMKFLKSVVADMDEHV 148          
The following BLAST results are available for this feature:
BLAST of CF835963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
IPRT1_CATRO5.383e-1128.29Probable intracellular pathogenesis-related protei... [more]
ML329_ARATH7.030e-1128.57MLP-like protein 329 OS=Arabidopsis thaliana GN=ML... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835963 ID=CF835963; Name=CF835963; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTAATTATCTGAAGCTCAGCTTTTATTTAACGTTTC
AATATATAAATACTAATGGAGGTAATTAAATAGTACCTGGCGGAGAAGCT
CTTACTCCTTACCAACTCACAATACAGAGACATAACAGAATAAACAATGT
ATAGAATACATAGCGGAAGGTAATGACTCCACATTCTTAATAATATTGTT
ATTTTAAAAGTCCAACAACACAAGCACAAGATTAATACATGATATATATG
CAACGTAAGTGCGTGCTTAGGCAGCTTTTGCTCCTAATTAATTGGCCTTG
AGAATATAGTCATCCACTTCCTGAAAGTTCTTGAGTGCAAAGTCCTTGAT
GACGCTTGGATCGGGAACATCATCGCTTGCCTTTTCAAACTCACAAGCCC
ACTTCACCAAGCTCCCTTCCCCCTTCGGATTAACACTCACGATGCCTTTG
AAAGCCTTGTAGTACTTCAACAGGTCCCCATCAATTACCTTGTAAGTAAC
CACCTTGTTTGCTTCATCTACATTCTCGATCTTCTCTGTCGATACCTTCA
CAATTGGAGAACCGTCAGCATAAGTGATGAGACGCACAGAGCCAGGGGCC
TTGCCGTCGCCCTCCAGCACTTGGATGCTCTTGTAATCGTGAGAGAATGC
CTTGGGAAACAGAGTGGTGGAGTCCCTAATGCTTCCCCAGAATTTGTCAG
CCGATGACTTCACCTCAAGCTCGACTTCAAGCTTCCCAC
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