CF835968

Overview
NameCF835968
Unique NameCF835968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9528 contig Csv1_Contig9528:20..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA4_HUMAN (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  196 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVEN 558
            L + NFD  ++  D ILV+FYAPWCGHCK+LAP+ ++AA  L+K   PI +AKVDA   + LA + ++  +PTLKIF  G P +Y GPR+   +V Y+ +   P    + +  +V +F+++
Sbjct:  182 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSGPPSKEILTLKQVQEFLKD 302          

HSP 2 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 46/119 (38.66%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  154 EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPD 510
            E++ + K +  V+ L+++NFD+ ++  D +L++FYAPWCGHCK+ AP+ ++ A IL     PI +AK+DA   S LAS+ ++  +PT+KI   G   +Y G R  E +V  +++   PD
Sbjct:   53 EDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPD 171          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDI2_ARATH (Protein disulfide-isomerase 2 OS=Arabidopsis thaliana GN=At1g77510 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 59/133 (44.36%), Postives = 86/133 (64.66%), Query Frame = 1
Query:  151 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS--RLASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKFVAP-DVSILNSDA 534
            SEE  +F     V+ LD SNF   IS  D+I+V+FYAPWCGHC++LAP+ ++AA  L+    P+ +AK+DA + +    A++ +I  FPTLKI  +G  +  +Y GPR+AE +V YLKK   P  V I ++D+
Sbjct:   24 SEETKEF-----VLTLDHSNFTETISKHDFIVVEFYAPWCGHCQKLAPEYEKAASELSSHNPPLALAKIDASEEANKEFANEYKIQGFPTLKILRNGGKSVQDYNGPREAEGIVTYLKKQSGPASVEIKSADS 151          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDI2_DICDI (Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 62/165 (37.58%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  196 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--SVMSNLALKYKKKAWFAVA--KDFSED 678
            LD  NF +++S  D  LV FYAPWCGHCK L P  +EAA  L+  K+ I IAKVD  ++ +L  + ++  +PTL +F +G    Y G R  + +V+ L++ + P +S L S+ ++ +F +        F     D+   + S LA   KK A FAV   KDFS++
Sbjct:   46 LDSDNFHNSVSEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKK-IAIAKVDCTQHEQLCKQNKVQGYPTLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPTISTLESNEDIEEFKKQHPISVVGFFDNDHDDRFKLFSELAGNNKKSAKFAVVIDKDFSKE 209          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDI1_CAEEL (Protein disulfide-isomerase 1 OS=Caenorhabditis elegans GN=pdi-1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGF----GLDESVMSNLALKYKKKAWFAVA 660
            V+ L ESNF+  I+  +++LV FYAPWC HCK LAP+ DEAA +L +    I +AKVDA +   LASK E+  +PT+  F  G PT+Y G R    +V ++KK   P V+ + S   V    E  G    + +G+      D + + N        A+FAVA
Sbjct:   25 VLVLTESNFEETINGNEFVLVKFYAPWCVHCKSLAPKYDEAADLLKEEGSDIKLAKVDATENQALASKFEVRGYPTILYFKSGKPTKYTGGRATAQIVDWVKKKSGPTVTTVES---VEQLEELKGKTRVVVLGYFKDAKSDAATIYNEVADSVDDAFFAVA 183          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA4_BOVIN (Protein disulfide-isomerase A4 OS=Bos taurus GN=PDIA4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  196 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVEN 558
            L + NFD  ++  D ILV+FYAPWCGHCK+LAP+ ++AA  L+K   PI +AKVDA   + LA + ++ ++PTLKIF  G    Y GPR+   +V Y+ +   P    + +  +V +F+++
Sbjct:  181 LTKDNFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKSSPPIPLAKVDAIAETDLAKRFDVSSYPTLKIFRKGKAFSYNGPREKYGIVDYMMEQSGPPSKQILALKQVQEFLKD 301          

HSP 2 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 44/119 (36.97%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  154 EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPD 510
            +++ + K +  V+ L+++NFD+ ++  D +L++FYAPWCGHCK+ AP+ ++ A  L +   PI +AK+DA   S LAS+ ++  +PT+KI   G   +Y G R  E +V  +K+   P+
Sbjct:   52 DDDLEVKEENGVLILNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAATLKENDPPIPVAKIDATSESALASRFDVSGYPTIKILKKGQEVDYEGSRTQEEIVAKVKEVSQPN 170          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDI2_CAEEL (Protein disulfide-isomerase 2 OS=Caenorhabditis elegans GN=pdi-2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            VI L + NFD  I+  ++ILV+FYAPWCGHCK LAP+  +AA  L +    I + K+DA  +  ++SK E+  +PTLK+F +G P EY G R  + ++ +LKK   P    L     V +  E+A
Sbjct:   25 VIVLTKDNFDEVINGNEFILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHGEVSSKFEVRGYPTLKLFRNGKPQEYNGGRDHDSIIAWLKKKTGPVAKPLADADAVKELQESA 149          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_BOVIN (Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            V+ L + NFD A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  S L+  A     VE++
Sbjct:   28 VLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAASTLSDGAAAEALVESS 155          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_RAT (Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 52/131 (39.69%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  178 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            +  V+ L +SNF  A+++ +Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L+  A     V+++
Sbjct:   25 EDNVLVLKKSNFAEALAAHNYLLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSS 155          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_PONAB (Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            V+ L +SNF  A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  +IL   A     VE++
Sbjct:   26 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATILPDGAAAESLVESS 153          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_CRIGR (Protein disulfide-isomerase OS=Cricetulus griseus GN=P4HB PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  178 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            +  V+ L +SNF  A+++ +Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L+  A     ++++
Sbjct:   25 EDNVLVLKKSNFAEALAAHNYLLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAETLIDSS 155          
The following BLAST results are available for this feature:
BLAST of CF835968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PDIA4_HUMAN9.138e-2342.15Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
PDI2_ARATH9.138e-2344.36Protein disulfide-isomerase 2 OS=Arabidopsis thali... [more]
PDI2_DICDI2.659e-2237.58Protein disulfide-isomerase 2 OS=Dictyostelium dis... [more]
PDI1_CAEEL5.923e-2238.89Protein disulfide-isomerase 1 OS=Caenorhabditis el... [more]
PDIA4_BOVIN1.010e-2141.32Protein disulfide-isomerase A4 OS=Bos taurus GN=PD... [more]
PDI2_CAEEL1.320e-2141.60Protein disulfide-isomerase 2 OS=Caenorhabditis el... [more]
PDIA1_BOVIN3.839e-2142.19Protein disulfide-isomerase OS=Bos taurus GN=P4HB ... [more]
PDIA1_RAT1.117e-2039.69Protein disulfide-isomerase OS=Rattus norvegicus G... [more]
PDIA1_PONAB1.117e-2042.19Protein disulfide-isomerase OS=Pongo abelii GN=P4H... [more]
PDIA1_CRIGR1.905e-2038.93Protein disulfide-isomerase OS=Cricetulus griseus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835968 ID=CF835968; Name=CF835968; organism=Citrus sinensis; type=EST; length=681bp
TTTCATTCCATCTTTTAAGAGCGAAACTGAAAACAAATCACATCGAAATT
GCATATGCGAGGGATGAGTAAAGGTAGAATATGGATCTTATTGTGTCTGT
TGTTATTGACAGGAAGAGGTATGATGTTATTGACAGGAAGAGGCTTGTCT
TCGGAAGAAGAAACAAAATTCAAAATTGACGGGAAAGTAATAGAACTTGA
CGAATCCAACTTCGATTCTGCAATCTCGTCTTTTGATTACATTTTAGTCG
ATTTTTACGCTCCTTGGTGCGGCCACTGCAAGCGCCTCGCTCCTCAGTTA
GACGAAGCTGCTCCGATACTTGCTAAATTGAAAGAGCCAATTGTAATAGC
AAAAGTAGACGCTGACAAGTACAGCCGTCTTGCTAGTAAGCAAGAGATTG
ATGCATTTCCTACATTGAAGATATTTATGCATGGGATTCCTACGGAATAT
TATGGACCTAGAAAAGCAGAATTGCTTGTCCGTTATCTTAAGAAATTTGT
TGCCCCTGATGTCTCCATTCTTAATTCAGATGCGGAAGTTTCTGACTTTG
TTGAAAATGCTGGTACTTTCTTTCCCCTATTTATTGGTTTCGGGTTGGAT
GAATCAGTCATGTCAAACTTAGCTTTGAAGTATAAGAAAAAGGCCTGGTT
TGCTGTCGCTAAGGATTTCTCTGAGGACACC
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