CF835968

Overview
NameCF835968
Unique NameCF835968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_MOUSE (Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  178 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            +  V+ L +SNF+ A+++  Y+LV+FYAPWCGHCK LAP+  + A  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L+  A     V+++
Sbjct:   25 EDNVLVLKKSNFEEALAAHKYLLVEFYAPWCGHCKALAPEYAKRAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSS 155          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_MACFU (Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            V+ L +SNF  A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L   A     VE++
Sbjct:   28 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESS 155          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_HUMAN (Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            V+ L +SNF  A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L   A     VE++
Sbjct:   26 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESS 153          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_RABIT (Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  178 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            +  V+ L  SNF   +++  ++LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L   A     VE++
Sbjct:   24 EDNVLVLKSSNFAEELAAHKHLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSDIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLADSAAAESLVESS 154          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA2_PONAB (Protein disulfide-isomerase A2 OS=Pongo abelii GN=PDIA2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  157 EETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLAL 627
            EE   K DG ++ L       A+     +LV+FYAPWCGHC+ LAP+  +AA +LA     +++AKVD      LA +  +  +PTLK F  G    P EY GPR+AE +  +L++ V P    L  +A     ++        F     DE V + LAL
Sbjct:   35 EEEIPKEDG-ILVLSRHTLGLALREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESSVVMLAKVDGPAQPELAEEFGVTEYPTLKFFRDGNRTHPEEYTGPREAEGIAEWLRRRVGPSAMRLEDEAAAQALIDGRDLVVIGFFQDLHDEDVATFLAL 193          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA1_CHICK (Protein disulfide-isomerase OS=Gallus gallus GN=P4HB PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD 600
            V+ L  +NF+ A+++  ++LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA + + LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L   A     V+++     + IGF  D
Sbjct:   31 VLVLRAANFEQALAAHRHLLVEFYAPWCGHCKALAPEYAKAAAQLKAEGSEIRLAKVDATEEAELAQQFGVRGYPTIKFFRNGDKAAPREYTAGREADDIVSWLKKRTGPAATTLTDAAAAETLVDSSEV---VVIGFFKD 168          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: ERP60_SCHMA (Probable protein disulfide-isomerase ER-60 OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  184 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLAL 627
            KV+EL + NF S + S    LV FYAPWCGHCK+LAP+   AA I++     + + KVD      + S+  +  +PTLKIF +G +  EY GPR A  +  Y+     P    +++ ++V + + +       F+    D  + + +AL
Sbjct:   18 KVLELTKDNFHSELKSIPVALVKFYAPWCGHCKKLAPEFTSAAQIISGKTNDVKLVKVDCTTQESICSEFGVSGYPTLKIFRNGDLDGEYNGPRNANGIANYMISRAGPVSKEVSTVSDVENVLSDDKPTVFAFVKSSSDPLIKTFMAL 166          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA4_CAEEL (Probable protein disulfide-isomerase A4 OS=Caenorhabditis elegans GN=C14B9.2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  184 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFV 552
            +V+ L   NFD  IS+ + +LV+FYAPWCGHCK+LAP+ ++AA  L      + + KVDA     L +K  +  +PT+KI  +G   +Y GPR+A  +++Y+     P    L    +V  F+
Sbjct:  148 EVVTLTTENFDDFISNNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKVDATIEKDLGTKYGVSGYPTMKIIRNGRRFDYNGPREAAGIIKYMTDQSKPAAKKLPKLKDVERFM 270          

HSP 2 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  148 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI-PTEYYGPRKAELLVRYLKKFVAPD 510
            +S++E  +++D  V+ L + NFD+ +     +LV FYAPWCGHCK LAP+ ++A+      K  I +AKVDA   + L  + EI  +PTLK +  G  P +Y G R    +V +++  V P+
Sbjct:   25 ASDDELNYEMDEGVVVLTDKNFDAFLKKNPSVLVKFYAPWCGHCKHLAPEYEKASS-----KVSIPLAKVDATVETELGKRFEIQGYPTLKFWKDGKGPNDYDGGRDEAGIVEWVESRVDPN 141          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA3_PONAB (Protein disulfide-isomerase A3 OS=Pongo abelii GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  187 VIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVEN 558
            V+EL + NF+S IS   S   +LV+F+APWCGHCKRLAP+ + AA    +LK  + +AKVD    +   +K  +  +PTLKIF  G     Y GPR A+ +V +LKK   P    L ++ E   F+ +
Sbjct:   27 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAA---TRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISD 151          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA3_HUMAN (Protein disulfide-isomerase A3 OS=Homo sapiens GN=PDIA3 PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  187 VIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVEN 558
            V+EL + NF+S IS   S   +LV+F+APWCGHCKRLAP+ + AA    +LK  + +AKVD    +   +K  +  +PTLKIF  G     Y GPR A+ +V +LKK   P    L ++ E   F+ +
Sbjct:   27 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAA---TRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISD 151          
The following BLAST results are available for this feature:
BLAST of CF835968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PDIA1_MOUSE2.489e-2038.93Protein disulfide-isomerase OS=Mus musculus GN=P4h... [more]
PDIA1_MACFU4.245e-2041.41Protein disulfide-isomerase OS=Macaca fuscata fusc... [more]
PDIA1_HUMAN4.245e-2041.41Protein disulfide-isomerase OS=Homo sapiens GN=P4H... [more]
PDIA1_RABIT3.593e-1938.93Protein disulfide-isomerase OS=Oryctolagus cunicul... [more]
PDIA2_PONAB6.130e-1935.63Protein disulfide-isomerase A2 OS=Pongo abelii GN=... [more]
PDIA1_CHICK8.005e-1937.59Protein disulfide-isomerase OS=Gallus gallus GN=P4... [more]
ERP60_SCHMA8.005e-1933.56Probable protein disulfide-isomerase ER-60 OS=Schi... [more]
PDIA4_CAEEL1.046e-1837.40Probable protein disulfide-isomerase A4 OS=Caenorh... [more]
PDIA3_PONAB1.046e-1841.41Protein disulfide-isomerase A3 OS=Pongo abelii GN=... [more]
PDIA3_HUMAN1.046e-1841.41Protein disulfide-isomerase A3 OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02D07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835968 ID=CF835968; Name=CF835968; organism=Citrus sinensis; type=EST; length=681bp
TTTCATTCCATCTTTTAAGAGCGAAACTGAAAACAAATCACATCGAAATT
GCATATGCGAGGGATGAGTAAAGGTAGAATATGGATCTTATTGTGTCTGT
TGTTATTGACAGGAAGAGGTATGATGTTATTGACAGGAAGAGGCTTGTCT
TCGGAAGAAGAAACAAAATTCAAAATTGACGGGAAAGTAATAGAACTTGA
CGAATCCAACTTCGATTCTGCAATCTCGTCTTTTGATTACATTTTAGTCG
ATTTTTACGCTCCTTGGTGCGGCCACTGCAAGCGCCTCGCTCCTCAGTTA
GACGAAGCTGCTCCGATACTTGCTAAATTGAAAGAGCCAATTGTAATAGC
AAAAGTAGACGCTGACAAGTACAGCCGTCTTGCTAGTAAGCAAGAGATTG
ATGCATTTCCTACATTGAAGATATTTATGCATGGGATTCCTACGGAATAT
TATGGACCTAGAAAAGCAGAATTGCTTGTCCGTTATCTTAAGAAATTTGT
TGCCCCTGATGTCTCCATTCTTAATTCAGATGCGGAAGTTTCTGACTTTG
TTGAAAATGCTGGTACTTTCTTTCCCCTATTTATTGGTTTCGGGTTGGAT
GAATCAGTCATGTCAAACTTAGCTTTGAAGTATAAGAAAAAGGCCTGGTT
TGCTGTCGCTAAGGATTTCTCTGAGGACACC
back to top