CF835968

Overview
NameCF835968
Unique NameCF835968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDI_HUMIN (Protein disulfide-isomerase OS=Humicola insolens PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSD 531
            V++L +  FD  I + D +L +F+APWCGHCK LAP+ +EAA  L   ++ I +AKVD  + + L  +  ++ +PTLK+F  G+   + Y G RKA  +  Y+ K   P VS +  D
Sbjct:   23 VVQLKKDTFDDFIKTNDLVLAEFFAPWCGHCKALAPEYEEAATTLK--EKNIKLAKVDCTEETDLCQQHGVEGYPTLKVF-RGLDNVSPYKGQRKAAAITSYMIKQSLPAVSEVTKD 136          

HSP 2 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 46/134 (34.33%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  172 KIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK--LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF---MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE 555
            K +G V  +   N++  +      +L++FYAPWCGHCK LAP+ +E   + AK   K+ +VIAKVDA          EI  FPT+K++     G P  Y G R  E L++++ +      +I     E S   E
Sbjct:  352 KQEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAAISEDAEETSSATE 482          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEV 540
            V+ L E NF+  +      LV+FYAPWCGHCK+LAP+  E  P   K  + ++IAKVD D++  + SK  +  +PT++ F  G   P ++ GPR AE L  ++      +V I  + + V
Sbjct:   31 VVVLTEENFEKEVGHDKGALVEFYAPWCGHCKKLAPEY-EKLPNSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKFEGPRTAESLAEFVNTEGGTNVKIATAPSHV 149          

HSP 2 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  241 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKK 495
            +LV+FYAPWCGHCK LAP  ++ A +  K ++ +VIA +DADKY  LA K ++  FPTLK F  G     +Y G R  +  V ++ +
Sbjct:  168 VLVEFYAPWCGHCKSLAPIYEKVAAVF-KSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGRDLDDFVAFINE 253          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--PTEYYGPRKAELLVRYLKK 495
            V+ L + +F+  +      LV+FYAPWCGHCK+LAP+ ++      K K  ++IAKVD D+   + +K  +  +PT++ F  G   P +Y GPR AE L  Y+ K
Sbjct:   25 VVVLTDDSFEKEVGKDKGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIAKVDCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPRNAEALAEYVNK 128          

HSP 2 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 426
            V+ L   NFD  +   +  +LV+FYAPWCGHCK LAP  ++ A +  K +E +VIA +DAD +  L  K  +  FPTLK F
Sbjct:  143 VVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVF-KQEEGVVIANLDADAHKALGEKYGVSGFPTLKFF 222          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: GSBP_CHICK (Dolichyl-diphosphooligosaccharide--protein glycotransferase OS=Gallus gallus PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD 600
            V+   +SNF   +++  Y+ V+FYAP CGHCK LAP   +A   L      I  AKV+A + S LA +  + A+PT+K F +G    P EY   R+A+ +V +LKK   P  + L+  A     V+++     + IGF  D
Sbjct:   25 VLVAKKSNFLEPLAAHSYLAVEFYAPLCGHCKALAPDYAKAGGKLKAEGSEIKAAKVEATEESDLAQQYGVRAYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSE--ITVIIGFFKD 163          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: EUG1_YEAST (Protein disulfide-isomerase EUG1 OS=Saccharomyces cerevisiae GN=EUG1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 50/140 (35.71%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE---YYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL 597
            ++ L E  F S I S   +LV+F+APWC H + L P L+EAA IL +   P+V  ++D +  S +  +Q I+ +PTLKIF +G   +   Y G +  + + +Y+ +     V  LNS+ E+  ++ENA    P+ I  GL
Sbjct:   35 LLVLTEKKFKSFIESHPLVLVEFFAPWCLHSQILRPHLEEAASILKEHNVPVV--QIDCEANSMVCLQQTINTYPTLKIFKNGRIFDGQVYRGVKITDEITQYMIQLYEASVIYLNSEDEIQPYLENA--TLPVVINRGL 170          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDI_ASPOR (Protein disulfide-isomerase OS=Aspergillus oryzae GN=pdiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKFVAPDVS 516
            V+ L    F++ +   D +L +F+APWCGHCK LAP+ ++AA  L +   P+V  KVD  +   L   Q ++ +PTLKIF  G+     Y G R+ E +V Y+ K   P VS
Sbjct:   31 VVSLTGDTFETFVKEHDLVLAEFFAPWCGHCKALAPKYEQAATELKEKNIPLV--KVDCTEEEALCRDQGVEGYPTLKIF-RGLDAVKPYQGARQTEAIVSYMVKQSLPAVS 139          

HSP 2 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:  241 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVAPDVSILNSD 531
            +L++FYAPWCGHCK LAP+ +E A +   + E + IAK+DA           I  FPT+K+F  G    P EY G R  E L  ++K+     V  L  D
Sbjct:  384 VLLEFYAPWCGHCKALAPKYEELASLYKDIPE-VTIAKIDATAND---VPDSITGFPTIKLFAAGAKDSPVEYEGSRTVEDLANFVKENGKHKVDALEVD 479          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDI2_SCHPO (Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe GN=SPAC17H9.14c PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 48/149 (32.21%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  157 EETKFKIDGKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM---HGIPTEYYGPRKAELLVRYLKKFV----APDVSILNSDAEVSDFVENAGTFFPL 579
            ++ K  +   V+ELD  NFD  +      +LV+FYA WCG+CKRLAP  +    +  K +  + I K++AD ++ +    E+ +FPT+K F       P  Y G R  E L+ Y+ K      +PD ++L++   +  F E A  F  +
Sbjct:  132 KKRKIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVF-KNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLDM 279          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELLV 480
            VIEL  SNF+  +   D + LV+FYAPWCGHC+RL P+  +AA     LK+ + +  VDADK+  L  +  +  FPT+KIF      P +Y G R  E +V
Sbjct:   27 VIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAA---TALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIV 124          

HSP 2 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 62/171 (36.26%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  187 VIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAA-PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPR-KAELLVRYLKKFV--APD---VSILNSDAEVSDFVEN---AGTFFPLFIGFGLDE-----SVMSNLALKYKKKAW 648
            VIEL + +FD + + S D  +V+FYAPWCGHCK L P+   AA  +  + K  + +A VDA     LAS+  I  FPT+KIF  G  P +Y G R +++++ R L  F   AP    + I++ D       E+     +  P  +  G         V+  LA KYKKK W
Sbjct:  162 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIISEDIAKRTCEEHQLCVVSVLPHILDTGAAGRNSYLEVLLKLADKYKKKMW 332          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELLV 480
            VIEL  SNF+  +   D + LV+FYAPWCGHC+RL P+  +AA     LK+ + +  VDADK+  L  +  +  FPT+KIF      P +Y G R  E +V
Sbjct:   27 VIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAA---TALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIV 124          

HSP 2 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 63/171 (36.84%), Postives = 87/171 (50.88%), Query Frame = 1
Query:  187 VIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAA-PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPR-KAELLVRYLKKFV--APD---VSILNSDAEVSDFVEN---AGTFFPLFIGFGLDE-----SVMSNLALKYKKKAW 648
            VIEL + +FD + + S D  +V+FYAPWCGHCK L P+   AA  +  + K  + +A VDA     LAS+  I  FPT+KIF  G  P +Y G R +++++ R L  F   AP    + I+N D       E+        P  +  G         V+  LA KYKKK W
Sbjct:  162 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCVVAVLPHILDTGAAGRNSYLEVLLKLADKYKKKMW 332          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  187 VIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELLV 480
            VIEL  SNF+   I S    LV+FYAPWCGHC+RL P+  +AA     LK+ + +  VDADK+  L  +  +  FPT+KIF      P +Y G R  E +V
Sbjct:   27 VIELTPSNFNREVIQSNSLWLVEFYAPWCGHCQRLTPEWKKAA---TALKDVVKVGAVDADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 124          

HSP 2 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 61/170 (35.88%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  187 VIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAA-PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPR-KAELLVRYLKKFV--APD---VSILNSDAEVSDFVEN---AGTFFPLFIGFGLDES----VMSNLALKYKKKAW 648
            VIEL +  FD + + S D  +V+FYAPWCGHCK L P+   AA  +  + K  + +A VDA     LA++  I  FPT+KIF  G  P +Y G R +++++ R L  F   AP    + I+N D       E+        P  +  G   +    ++  LA KYKKK W
Sbjct:  162 VIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGEAPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDVAKKMCEEHQLCVVAVLPHILDTGAARNSYLEILLKLADKYKKKMW 331          
The following BLAST results are available for this feature:
BLAST of CF835968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PDI_HUMIN1.278e-1639.32Protein disulfide-isomerase OS=Humicola insolens P... [more]
PDIA6_MEDSA1.669e-1637.50Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH2.180e-1639.05Probable protein disulfide-isomerase A6 OS=Arabido... [more]
GSBP_CHICK3.719e-1636.17Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
EUG1_YEAST8.284e-1635.71Protein disulfide-isomerase EUG1 OS=Saccharomyces ... [more]
PDI_ASPOR2.410e-1539.29Protein disulfide-isomerase OS=Aspergillus oryzae ... [more]
PDI2_SCHPO3.148e-1532.21Protein disulfide-isomerase C17H9.14c OS=Schizosac... [more]
PDIA6_PONAB4.111e-1543.56Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN4.111e-1543.56Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
PDIA6_MESAU5.370e-1544.55Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02D07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835968 ID=CF835968; Name=CF835968; organism=Citrus sinensis; type=EST; length=681bp
TTTCATTCCATCTTTTAAGAGCGAAACTGAAAACAAATCACATCGAAATT
GCATATGCGAGGGATGAGTAAAGGTAGAATATGGATCTTATTGTGTCTGT
TGTTATTGACAGGAAGAGGTATGATGTTATTGACAGGAAGAGGCTTGTCT
TCGGAAGAAGAAACAAAATTCAAAATTGACGGGAAAGTAATAGAACTTGA
CGAATCCAACTTCGATTCTGCAATCTCGTCTTTTGATTACATTTTAGTCG
ATTTTTACGCTCCTTGGTGCGGCCACTGCAAGCGCCTCGCTCCTCAGTTA
GACGAAGCTGCTCCGATACTTGCTAAATTGAAAGAGCCAATTGTAATAGC
AAAAGTAGACGCTGACAAGTACAGCCGTCTTGCTAGTAAGCAAGAGATTG
ATGCATTTCCTACATTGAAGATATTTATGCATGGGATTCCTACGGAATAT
TATGGACCTAGAAAAGCAGAATTGCTTGTCCGTTATCTTAAGAAATTTGT
TGCCCCTGATGTCTCCATTCTTAATTCAGATGCGGAAGTTTCTGACTTTG
TTGAAAATGCTGGTACTTTCTTTCCCCTATTTATTGGTTTCGGGTTGGAT
GAATCAGTCATGTCAAACTTAGCTTTGAAGTATAAGAAAAAGGCCTGGTT
TGCTGTCGCTAAGGATTTCTCTGAGGACACC
back to top