CF835968

Overview
NameCF835968
Unique NameCF835968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 50/130 (38.46%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  187 VIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELLVRYL---------KKFVAPDVSILNSDAEV 540
            V++L  SNFD  +  S    LV+F+APWCGHCK LAP  +E A  L   K+ + IAKVDAD    L  +  +  FPTLK F      P +Y G R  + L  ++         KK  AP +  + +DA +
Sbjct:   22 VLDLIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFPTLKFFDGKSEQPVDYKGGRDLDSLSNFIAEKTGVKARKKGSAPSLVNILNDATI 151          

HSP 2 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  196 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS--RLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKK 495
            L+++    AI     +LV F APWCGHCK LAP  ++ A   A   E I IAKVDAD  +  + A++  +  FPT+K F  G   P +Y G R    LV++L +
Sbjct:  146 LNDATIKGAIGGDKNVLVAFTAPWCGHCKNLAPTWEKLAATFASDPE-ITIAKVDADAPTGKKSAAEYGVSGFPTIKFFPKGSTTPEDYNGGRSEADLVKFLNE 248          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 62/171 (36.26%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  187 VIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAA-PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPR-KAELLVRYLKKFV--APD---VSILNSDAEVSDFVEN---AGTFFPLFIGFGLDE-----SVMSNLALKYKKKAW 648
            V+EL +  FD + + S D  +V+FYAPWCGHCK L P+   AA  +  + K  + +A VDA     LAS+  I  FPT+KIF  G  P +Y G R +++++ R L  F   AP    + I+N D       E+        P  +  G         V+  LA KYKKK W
Sbjct:  162 VVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLCVVAVLPHILDTGATGRNSYLEVLLKLADKYKKKMW 332          

HSP 2 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELLV 480
            VIEL  SNF+  +   D + LV+FYAPWCGHC+RL P+  +AA   + LK+ + +  V+ADK+  L  +  +  FPT+KIF      P +Y G R  E +V
Sbjct:   27 VIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAA---SALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 124          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 62/171 (36.26%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  187 VIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAA-PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPR-KAELLVRYLKKFV--APD---VSILNSDAEVSDFVEN---AGTFFPLFIGFGLDE-----SVMSNLALKYKKKAW 648
            V+EL +  FD + + S D  +V+FYAPWCGHCK L P+   AA  +  + K  + +A VDA     LAS+  I  FPT+KIF  G  P +Y G R +++++ R L  F   AP    + I+N D       E+        P  +  G         V+  LA KYKKK W
Sbjct:  162 VVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLCVVAVLPHILDTGAAGRNSYLEVLLKLADKYKKKMW 332          

HSP 2 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  187 VIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELLV 480
            VIEL  SNF+  +   D + LV+FYAPWCGHC+RL P+  +AA     LK+ + +  V+ADK+  L  +  +  FPT+KIF      P +Y G R  E +V
Sbjct:   27 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAA---TALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 124          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: TMX3_XENLA (Protein disulfide-isomerase TMX3 OS=Xenopus laevis GN=tmx3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  235 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIG 588
            D  LVDFYAPWCGHCK+L P  +E    +     PI + K+DA  YS +AS+  +  FPT+K     +   Y GPR  E +V +  +   P +  L S  ++ D V+       +++G
Sbjct:   42 DIWLVDFYAPWCGHCKKLEPVWNEVGIEIRTSGSPIRVGKIDATVYSSIASEFGVRGFPTIKALKGDMAYNYRGPRTKEDIVEFANRVAGPLIRPLPSQ-QMFDHVKKRHPVLFVYVG 158          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 45/136 (33.09%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIG 588
            G V +L+ES  D+     D  LVDFYAPWCGHCK+L P  +E    +  +  P+ + K+DA  YS +AS+  +  +PT+K+    +   Y GPR  + ++ +  +     +  L S  ++ D V      F ++IG
Sbjct:   29 GFVEDLNESFKDNRKD--DIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIIEFAHRVSGALIRPLPSQ-QMFDHVRKRHRVFFVYIG 161          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 486
            G V +LDES  ++   + D  LVDFYAPWCGHCK+L P  +E    +  +  P+ + K+DA  YS +AS+  +  +PT+K+    +   Y GPR  + ++ +
Sbjct:   26 GFVEDLDESFKENR--NDDIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIIEF 125          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: TIGA_ASPNG (Protein disulfide-isomerase tigA OS=Aspergillus niger GN=tigA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  175 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELLVRYLKK 495
            +   V++L   NFD  +  S    LV+F+APWCGHCK LAP  +E     A   + + + KVDAD++  L  K  +  FPTLK F      P +Y G R  E L  ++ +
Sbjct:   17 VTAAVVDLVPKNFDDVVLKSGKPALVEFFAPWCGHCKNLAPVYEELGQAFAHASDKVTVGKVDADEHRDLGRKFGVQGFPTLKWFDGKSDEPEDYKGGRDLESLSSFISE 126          

HSP 2 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  172 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE--IDAFPTLKIFMHGI--PTEYYGPRKAELLVRYLKK 495
            K   KV  L+++ F  A+   + +LV F APWCGHCK LAP  +  A     L+  +VIAKVDAD  +  A+ +E  +  +PT+K F  G      Y G R  +  + +L +
Sbjct:  137 KEPSKVEMLNDATFKGAVGGDNDVLVAFTAPWCGHCKNLAPTWEALANDFV-LEPNVVIAKVDADAENGKATAREQGVSGYPTIKFFPKGSTESVPYEGARSEQAFIDFLNE 247          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: ERP44_MOUSE (Endoplasmic reticulum resident protein ERp44 OS=Mus musculus GN=Erp44 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  175 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL---KEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSD 546
            I  ++  LD  N D  +++ D  LV+FYA WC   + L P  +EA+ ++ +    K  +V A+VD D++S +A +  I  +PTLK+F +G  +  EY G R  + L  Y+++  +  V  + S  EV++
Sbjct:   27 ITAEIASLDSENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSNPVHEIQSLDEVTN 155          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: ERP44_BOVIN (Endoplasmic reticulum resident protein ERp44 OS=Bos taurus GN=ERP44 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 40/128 (31.25%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  175 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK---LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVS 543
            +  ++I LD  N D  +++ D  LV+FYA WC   + L P  +EA+ ++ +       +V A+VD D++S +A +  I  +PTLK+F +G  +  EY G R  + L  Y+++  +  +  L+  AE++
Sbjct:   27 VTAEIISLDTENIDDILNNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNANQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQELHDLAEIT 154          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIG 588
            G V +LDES  ++   + D  LVDFYAPWCGHCK+L P  +E    +  +  P+ + K+DA  YS +AS+  +  +PT+K+    +   + GPR  + ++ +  +     +  L S  ++ + ++     F ++IG
Sbjct:   26 GFVEDLDESFKENR--NDDIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYNHRGPRTKDDIIEFAHRVSGALIRPLPSQ-QMFEHMQKRHRVFFVYIG 158          
The following BLAST results are available for this feature:
BLAST of CF835968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ERP38_NEUCR5.370e-1538.46Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
PDIA6_RAT7.013e-1536.26Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE9.159e-1536.26Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
TMX3_XENLA1.562e-1435.59Protein disulfide-isomerase TMX3 OS=Xenopus laevis... [more]
TMX3_MOUSE1.562e-1433.09Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
TMX3_HUMAN4.546e-1437.25Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
TIGA_ASPNG5.937e-1437.27Protein disulfide-isomerase tigA OS=Aspergillus ni... [more]
ERP44_MOUSE7.754e-1432.56Endoplasmic reticulum resident protein ERp44 OS=Mu... [more]
ERP44_BOVIN7.754e-1431.25Endoplasmic reticulum resident protein ERp44 OS=Bo... [more]
TMX3_PONAB1.323e-1330.88Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835968 ID=CF835968; Name=CF835968; organism=Citrus sinensis; type=EST; length=681bp
TTTCATTCCATCTTTTAAGAGCGAAACTGAAAACAAATCACATCGAAATT
GCATATGCGAGGGATGAGTAAAGGTAGAATATGGATCTTATTGTGTCTGT
TGTTATTGACAGGAAGAGGTATGATGTTATTGACAGGAAGAGGCTTGTCT
TCGGAAGAAGAAACAAAATTCAAAATTGACGGGAAAGTAATAGAACTTGA
CGAATCCAACTTCGATTCTGCAATCTCGTCTTTTGATTACATTTTAGTCG
ATTTTTACGCTCCTTGGTGCGGCCACTGCAAGCGCCTCGCTCCTCAGTTA
GACGAAGCTGCTCCGATACTTGCTAAATTGAAAGAGCCAATTGTAATAGC
AAAAGTAGACGCTGACAAGTACAGCCGTCTTGCTAGTAAGCAAGAGATTG
ATGCATTTCCTACATTGAAGATATTTATGCATGGGATTCCTACGGAATAT
TATGGACCTAGAAAAGCAGAATTGCTTGTCCGTTATCTTAAGAAATTTGT
TGCCCCTGATGTCTCCATTCTTAATTCAGATGCGGAAGTTTCTGACTTTG
TTGAAAATGCTGGTACTTTCTTTCCCCTATTTATTGGTTTCGGGTTGGAT
GAATCAGTCATGTCAAACTTAGCTTTGAAGTATAAGAAAAAGGCCTGGTT
TGCTGTCGCTAAGGATTTCTCTGAGGACACC
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