CF835968

Overview
NameCF835968
Unique NameCF835968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: YEU5_SCHPO (Thioredoxin domain-containing protein C13F5.05, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC13F5.05 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 42/130 (32.31%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  190 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG------IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENA 561
            IEL+  NF   + +    LV FYAPWCG+CK+L P   + A  L  L  P+     DAD+   + S+ ++  FPT+K+            T+Y G R  + L +++   +   V IL S+A+   F+++A
Sbjct:   34 IELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLL-PVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVKILTSEAKTQKFIQDA 162          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA6_CAEEL (Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  187 VIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF--MHGIPTEYYGPRKAELL 477
            V+EL E+NF S  I+S D  +V+FYAPWCGHCK L P+  +AA   + LK    +  VD  ++  +     +  FPTLKIF      PT+Y G R A+ +
Sbjct:   26 VVELTEANFQSKVINSDDIWIVEFYAPWCGHCKSLVPEYKKAA---SALKGVAKVGAVDMTQHQSVGGPYNVQGFPTLKIFGADKKKPTDYNGQRTAQAI 122          

HSP 2 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  184 KVIELDESNF-DSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT----EYYGPRKAELLVRY 486
            +V+EL ++NF D  ++S D  LV+F+APWCGHCK L PQ   AA   ++LK  + +  +DA  ++ +A+K  I  FPT+K F  G       +Y G R++  +V +
Sbjct:  165 EVVELTDANFEDLVLNSKDIWLVEFFAPWCGHCKSLEPQWKAAA---SELKGKVRLGALDATVHTVVANKFAIRGFPTIKYFAPGSDVSDAQDYDGGRQSSDIVAW 267          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA5_MOUSE (Protein disulfide-isomerase A5 OS=Mus musculus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL-AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 501
            G V  L + +FD  +     +LV F+APWCGHCK++ P+ + AA +L    +   V+A VDA     LA +  I AFPTLK F +       G ++A   +R  KKF+
Sbjct:  274 GSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATVNEALAGRFHISAFPTLKYFKN-------GEQQAVPALRTKKKFI 374          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: ERP44_HUMAN (Endoplasmic reticulum resident protein ERp44 OS=Homo sapiens GN=ERP44 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 38/125 (30.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  184 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK---LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVS 543
            ++  LD  N D  +++ D  LV+FYA WC   + L P  +EA+ ++ +    +  +V A+VD D++S +A +  I  +PTLK+F +G  +  EY G R  + L  Y+++  +  +  +   AE++
Sbjct:   30 EITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEIT 154          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA5_RAT (Protein disulfide-isomerase A5 OS=Rattus norvegicus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL-AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 501
            G V  L + +FD  +     +LV F+APWCGHCK++ P+ + AA +L    +   V+A VDA     LA +  I AFPTLK F +       G ++A   +R  KKF+
Sbjct:  274 GSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATINEALAERFHISAFPTLKYFKN-------GEQQAVPALRTKKKFI 374          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  190 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 504
            I   ++ FDS IS  + ++VDF+A WCG CKR+AP  +E +    K+    V  KVD D+ S +  K+ I + PT K++ +G   +         L + ++K+ A
Sbjct:    4 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKM----VFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA5_HUMAN (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL-AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 435
            G V  L + +FD  +     +LV F+APWCGHCK++ P+ ++AA  L  +     V+A VDA     LA +  I  FPTLK F +G
Sbjct:  276 GSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNG 361          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: PDIA5_BOVIN (Protein disulfide-isomerase A5 OS=Bos taurus GN=PDIA5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL-AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 435
            G V  L + +FD  +     +LV F+APWCGHCK++ P+ + AA +L  +     V+A VDA     LA +  I  FPTLK F +G
Sbjct:  278 GSVYHLSDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGEGDSSGVLAAVDATVNKALAERFHIAEFPTLKYFKNG 363          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  241 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFV 501
            +LVDFYA WCG C+ +AP L++     + L++ I + K+D DKY  +A++ +I + PTL +F  G P     G ++A  L++ L+ FV
Sbjct:   21 VLVDFYATWCGPCQMMAPILEQVG---SHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: Y5025_DICDI (Putative protein disulfide-isomerase DDB_G0275025 OS=Dictyostelium discoideum GN=DDB_G0275025 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 1
Query:  178 DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF-------MHGIPTEYYGPRKAELLVRY 486
            +  VI L + NF   + +S    +V+FYAPWCGHCK L P+ ++   +   LK  + I  ++ D+   L  + +I  FPTLK F         G P +Y G R A  + ++
Sbjct:   26 NSNVINLTKKNFQQQVLNSQQNWMVEFYAPWCGHCKSLKPEYEK---VSNNLKGLVKIGAINCDEEKELCGQYQIQGFPTLKFFSTNPKTGKKGQPEDYQGARSASEIAKF 133          
The following BLAST results are available for this feature:
BLAST of CF835968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
YEU5_SCHPO1.727e-1332.31Thioredoxin domain-containing protein C13F5.05, mi... [more]
PDIA6_CAEEL2.947e-1342.00Probable protein disulfide-isomerase A6 OS=Caenorh... [more]
PDIA5_MOUSE5.026e-1337.96Protein disulfide-isomerase A5 OS=Mus musculus GN=... [more]
ERP44_HUMAN5.026e-1330.40Endoplasmic reticulum resident protein ERp44 OS=Ho... [more]
PDIA5_RAT6.564e-1337.96Protein disulfide-isomerase A5 OS=Rattus norvegicu... [more]
THIO_PLAF75.557e-1233.33Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
PDIA5_HUMAN7.257e-1240.70Protein disulfide-isomerase A5 OS=Homo sapiens GN=... [more]
PDIA5_BOVIN9.479e-1240.70Protein disulfide-isomerase A5 OS=Bos taurus GN=PD... [more]
THIO1_SYNY31.617e-1138.64Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
Y5025_DICDI4.704e-1133.33Putative protein disulfide-isomerase DDB_G0275025 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835968 ID=CF835968; Name=CF835968; organism=Citrus sinensis; type=EST; length=681bp
TTTCATTCCATCTTTTAAGAGCGAAACTGAAAACAAATCACATCGAAATT
GCATATGCGAGGGATGAGTAAAGGTAGAATATGGATCTTATTGTGTCTGT
TGTTATTGACAGGAAGAGGTATGATGTTATTGACAGGAAGAGGCTTGTCT
TCGGAAGAAGAAACAAAATTCAAAATTGACGGGAAAGTAATAGAACTTGA
CGAATCCAACTTCGATTCTGCAATCTCGTCTTTTGATTACATTTTAGTCG
ATTTTTACGCTCCTTGGTGCGGCCACTGCAAGCGCCTCGCTCCTCAGTTA
GACGAAGCTGCTCCGATACTTGCTAAATTGAAAGAGCCAATTGTAATAGC
AAAAGTAGACGCTGACAAGTACAGCCGTCTTGCTAGTAAGCAAGAGATTG
ATGCATTTCCTACATTGAAGATATTTATGCATGGGATTCCTACGGAATAT
TATGGACCTAGAAAAGCAGAATTGCTTGTCCGTTATCTTAAGAAATTTGT
TGCCCCTGATGTCTCCATTCTTAATTCAGATGCGGAAGTTTCTGACTTTG
TTGAAAATGCTGGTACTTTCTTTCCCCTATTTATTGGTTTCGGGTTGGAT
GAATCAGTCATGTCAAACTTAGCTTTGAAGTATAAGAAAAAGGCCTGGTT
TGCTGTCGCTAAGGATTTCTCTGAGGACACC
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