CF835968

Overview
NameCF835968
Unique NameCF835968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: TXND5_HUMAN (Thioredoxin domain-containing protein 5 OS=Homo sapiens GN=TXNDC5 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 489
            G V+ L E+NFD  I+      + FYAPWCGHCK LAP  +E +    P LA +K    IA+VD      + SK  +  +PTL +F  G   +E+ G R  + L R++
Sbjct:  322 GTVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 424          
BLAST of CF835968 vs. ExPASy Swiss-Prot
Match: DJC10_XENLA (DnaJ homolog subfamily C member 10 OS=Xenopus laevis GN=dnajc10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  178 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI-PTEYYGPRKAELLVRYLKKFVAPDVSIL 522
            D ++I LD   FD A++S +   ++FY+P C HC  LAP   + A  +  L   + I  V+      L   Q I+++P L IF  G+ P +YYG R  E LV +   +++  V+ L
Sbjct:  129 DLEIITLDRGEFDGAVNSGELWFINFYSPGCSHCHDLAPTWRQFAKEMDGL---LRIGAVNCGDNRMLCRSQGINSYPNLYIFKSGMNPVKYYGERSKERLVNFAMPYISSTVTEL 241          
The following BLAST results are available for this feature:
BLAST of CF835968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TXND5_HUMAN6.144e-1138.89Thioredoxin domain-containing protein 5 OS=Homo sa... [more]
DJC10_XENLA8.024e-1133.62DnaJ homolog subfamily C member 10 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835968 ID=CF835968; Name=CF835968; organism=Citrus sinensis; type=EST; length=681bp
TTTCATTCCATCTTTTAAGAGCGAAACTGAAAACAAATCACATCGAAATT
GCATATGCGAGGGATGAGTAAAGGTAGAATATGGATCTTATTGTGTCTGT
TGTTATTGACAGGAAGAGGTATGATGTTATTGACAGGAAGAGGCTTGTCT
TCGGAAGAAGAAACAAAATTCAAAATTGACGGGAAAGTAATAGAACTTGA
CGAATCCAACTTCGATTCTGCAATCTCGTCTTTTGATTACATTTTAGTCG
ATTTTTACGCTCCTTGGTGCGGCCACTGCAAGCGCCTCGCTCCTCAGTTA
GACGAAGCTGCTCCGATACTTGCTAAATTGAAAGAGCCAATTGTAATAGC
AAAAGTAGACGCTGACAAGTACAGCCGTCTTGCTAGTAAGCAAGAGATTG
ATGCATTTCCTACATTGAAGATATTTATGCATGGGATTCCTACGGAATAT
TATGGACCTAGAAAAGCAGAATTGCTTGTCCGTTATCTTAAGAAATTTGT
TGCCCCTGATGTCTCCATTCTTAATTCAGATGCGGAAGTTTCTGACTTTG
TTGAAAATGCTGGTACTTTCTTTCCCCTATTTATTGGTTTCGGGTTGGAT
GAATCAGTCATGTCAAACTTAGCTTTGAAGTATAAGAAAAAGGCCTGGTT
TGCTGTCGCTAAGGATTTCTCTGAGGACACC
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