CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROM0 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.142e-27
Identity = 70/132 (53.03%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V+L++L KKGLI     + K PLKILG+G+L+ KL  +A AF+  AK+K+E AG
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNLDSLVKKGLI----FKPKFPLKILGNGKLNVKLKVQAHAFTKVAKQKIEDAG 143          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROMP (50S ribosomal protein L15 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplO PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.771e-27
Identity = 72/139 (51.80%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+            +  VNL  +  + F E + V++++L KKK L  P     K PLKILG+GE+  KL  +A AF+  AKEK+EAAG +  ++
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIVNLSKL--SEFKESEVVNIDSLVKKKLLFKP-----KFPLKILGNGEVKVKLKVQAHAFTKVAKEKIEAAGGSCEII 149          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROM9 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplO1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.232e-27
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+            +  +NL  ++   F + D V+L++L KKGLI     + K PLKILG+G+++ KL  +A AF+  AK+K+E AG +  +L
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLDKLK--DFNDNDTVNLDSLVKKGLI----FKPKFPLKILGNGKVNVKLTVQAHAFTKVAKQKIEDAGGSCELL 149          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNS9 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9902) GN=rplO PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.063e-26
Identity = 76/145 (52.41%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PKYVPV----NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-KKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+      H  L  PK+  V     LKD++     +G  V+L++L K G++       K PLK+LG+GEL+ K L  +A AF+TSA+ K+EAAG T   L
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALKDLK-----DGATVNLDSLVKDGIVT----SPKHPLKMLGNGELTVKNLTVQASAFTTSARTKIEAAGGTCETL 150          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNSC (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9605) GN=rplO PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.388e-26
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLK+LG+GEL +KKL  +A AF++SA  K+EAAG T  +L
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNDLKDGSTVNLDSLVKDGIVT----SPKHPLKMLGNGELTAKKLTVQAAAFTSSALTKIEAAGGTCDIL 150          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROMS (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain AS9601) GN=rplO PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.388e-26
Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K PLKILG+G+++ KL  +A +F+  AK+K+E AG
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGKINVKLKVQAHSFTKVAKQKIEDAG 143          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROMA (50S ribosomal protein L15 OS=Prochlorococcus marinus GN=rplO PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.813e-26
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+      H  L       L ++ +   L EG  V+L++L K G++       K PLK+LG+G L  KL  +A AF+ SAK K+E AG
Sbjct:   22 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNSKSFTLINVASLNSLKEGSTVNLDSLVKTGIVT----SPKYPLKVLGNGNLKVKLVVQAAAFTASAKTKIEGAG 144          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.813e-26
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = -3
Query:  406 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAA 804
            R  GRG++AGQG SCG GMRGQKSR G G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++  +      PLK+LGDGE++  L  KA AFS SAKEK+ AA
Sbjct:   17 RRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILTSNDG----PLKVLGDGEITVPLKVKAAAFSNSAKEKITAA 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNP2 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.368e-26
Identity = 70/134 (52.24%), Postives = 81/134 (60.45%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGIAAGQG SCGFGMRGQKSR G G + GFEGGQMPLYRR+PKL+                 L D+ A       EV+LE+L   G++  +      PLK+LGDGELS  L   A AFS  AK K+EAAG
Sbjct:   17 RRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFTIVNPKNFTIVNVGQLTDLPA-----NTEVTLESLMAAGIVTTNDG----PLKVLGDGELSVALKVTAAAFSNGAKAKIEAAG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.368e-26
Identity = 69/134 (51.49%), Postives = 86/134 (64.18%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGIAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++  +      PLKILGDGE+   L  +A A + SA+ K+EAAG
Sbjct:   17 RRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTNDG----PLKILGDGEVGVPLTIRAAAITPSARAKVEAAG 142          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_PROM02.142e-2753.0350S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROMP4.771e-2751.8050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM96.232e-2750.7250S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNS91.063e-2652.4150S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNSC1.388e-2651.4350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROMS1.388e-2650.7650S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROMA1.813e-2651.8850S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_MICAN1.813e-2651.8850S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_SYNP22.368e-2652.2450S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNJA2.368e-2651.4950S ribosomal protein L15 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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