CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRP7 (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain 70585) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.942e-20
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRP4 (50S ribosomal protein L15 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.942e-20
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRP2 (50S ribosomal protein L15 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.942e-20
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOPH (50S ribosomal protein L15 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.942e-20
Identity = 64/139 (46.04%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI-NPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            RGRG  +G G + G G +GQK+R G   R GFEGGQMPLYRR+PK     G  +    + + VN+  +    F +G +V+LE+L++ G+I NP     K  +KILG+GEL+KKLN K  AFS SA EK++A G    V+
Sbjct:   20 RGRGHGSGNGKTAGKGHKGQKARSG-APRVGFEGGQMPLYRRLPK----RGFKNRNTKEIISVNVSMLNR--FEDGADVTLESLREIGIISNP-----KDGVKILGNGELTKKLNVKVSAFSESAIEKIKALGGNAEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_DESAP (50S ribosomal protein L15 OS=Desulforudis audaxviator (strain MP104C) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 61/132 (46.21%), Postives = 82/132 (62.12%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            +G+GIA GQG + G G +GQK+R G GVR+GFEGGQMPL RR+PK     G  +     +  VNL+D+    F EG  V+ E L +  ++    R+    +KILG GEL K L  +A AFS +A+EK+ AAG
Sbjct:   19 KGQGIATGQGKTAGRGHKGQKARSGGGVRRGFEGGQMPLTRRMPK----RGFTNIFKKFFAVVNLEDLNR--FEEGTVVTPEVLLENRMV----RKGVDGIKILGTGELKKPLTVRAHAFSGAAREKIAAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOD6 (50S ribosomal protein L15 OS=Clostridium difficile (strain 630) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 61/134 (45.52%), Postives = 78/134 (58.21%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRG A GQG + G G +GQ SR G GVR GFEGGQMPL RR+PK     G  +     Y  VN++ +    F  G E++ E LK    I+  G++    +KILG+G L K L  KA  F+ SA+EK+E AG
Sbjct:   17 RRLGRGTATGQGKTAGRGQKGQWSRSGGGVRVGFEGGQMPLARRLPK----RGFNNIFKKVYTEVNVEVLNR--FENGTEITAELLKSTKTISKIGKD---GIKILGEGNLEKALTVKAAKFTASAQEKIEKAG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOCE (50S ribosomal protein L15 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 63/138 (45.65%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            +GRGI +G G + G G +GQ +R G GVR GFEGGQMPLY R+PK RG     +    KY  VN+ D+    F EG  V+ E LK  GL     ++    + ILG+GEL+KKL  +A  F+ +A EK+EAAG  + V+
Sbjct:   19 KGRGIGSGNGKTGGRGHKGQNARAGGGVRPGFEGGQMPLYMRLPK-RGF--NNYEFSKKYTEVNVSDLNI--FDEGTVVTEELLKSSGL----AKKIIDGVAILGNGELTKKLTVQATKFTKTATEKIEAAGGKVEVV 147          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_AQUAE (50S ribosomal protein L15 OS=Aquifex aeolicus GN=rplO PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 64/132 (48.48%), Postives = 79/132 (59.85%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPG-VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G   +   FEGGQ PLY RIPK     G  +    +Y PVN+  I+   F +G E++ E L  KGL +   R     +KILGDGEL+KK   KA AFS SAKEK+E AG
Sbjct:   21 GRGIGSGHGKTAGRGHKGQKSRSGDRKMPPYFEGGQTPLYMRIPK----RGFKNPTRKEYTPVNVGVIDKL-FEDGMEITPEVLASKGLCDEKDR-----VKILGDGELTKKFVIKAHAFSKSAKEKIEKAG 142          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_THEPX (50S ribosomal protein L15 OS=Thermoanaerobacter sp. (strain X514) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.312e-20
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  403 RER---GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            RER   GRGI +G G + G G +GQK+R G GVR GFEGGQMPL RR+PK     G  +    +Y  VN+  +E   F +G  ++ E L + G+I    ++ K  +KILGDG+L+KK   +A  FS SA EK++A G
Sbjct:   14 RERKRVGRGIGSGHGKTSGRGQKGQKARSGGGVRPGFEGGQMPLTRRLPK----RGFTNIFKKEYAIVNVGTLEER-FEDGAVITPEALIESGII----KDVKDGVKILGDGDLNKKFTVRAHKFSQSAIEKIQAVG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_THEP3 (50S ribosomal protein L15 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.312e-20
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  403 RER---GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            RER   GRGI +G G + G G +GQK+R G GVR GFEGGQMPL RR+PK     G  +    +Y  VN+  +E   F +G  ++ E L + G+I    ++ K  +KILGDG+L+KK   +A  FS SA EK++A G
Sbjct:   14 RERKRVGRGIGSGHGKTSGRGQKGQKARSGGGVRPGFEGGQMPLTRRLPK----RGFTNIFKKEYAIVNVGTLEER-FEDGAVITPEALIESGII----KDVKDGVKILGDGDLNKKFTVRAHKFSQSAIEKIQAVG 141          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STRP71.942e-2043.0750S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRP41.942e-2043.0750S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRP21.942e-2043.0750S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_CLOPH1.942e-2046.0450S ribosomal protein L15 OS=Clostridium phytoferm... [more]
RL15_DESAP2.536e-2046.2150S ribosomal protein L15 OS=Desulforudis audaxvia... [more]
RL15_CLOD62.536e-2045.5250S ribosomal protein L15 OS=Clostridium difficile... [more]
RL15_CLOCE2.536e-2045.6550S ribosomal protein L15 OS=Clostridium celluloly... [more]
RL15_AQUAE2.536e-2048.4850S ribosomal protein L15 OS=Aquifex aeolicus GN=r... [more]
RL15_THEPX3.312e-2045.2650S ribosomal protein L15 OS=Thermoanaerobacter sp... [more]
RL15_THEP33.312e-2045.2650S ribosomal protein L15 OS=Thermoanaerobacter ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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